RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ARSGQ96EG1 525 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 PDXPQ96GD0 296 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 SECISBP2Q96T21 854 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 THAP7Q9BT49 309 aaPredicted RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 CHIAQ9BZP6 476 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 ISG20L2Q9H9L3 353 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 ZSCAN32Q9NX65 697 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 CCL26Q9Y258 94 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 DDCP20711 480 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 HLA-FP30511 346 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 CCR6P51684 374 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 OCLNQ16625 522 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 TEX261Q6UWH6 196 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 RRM2BQ7LG56 351 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 DDX53Q86TM3 631 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 LRRTM4Q86VH4 590 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 NR2C2APQ86WQ0 139 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 FAM26EQ8N5C1 309 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 OR51G2Q8NGK0 314 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 ECHDC3Q96DC8 303 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 MACROD1Q9BQ69 325 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 POLDIP3Q9BY77 421 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 EQTNQ9NQ60 294 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 IMP3Q9NV31 184 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 PCDHGB7Q9Y5F8 929 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 U3KQ87 197 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 A0A0B4J203 849 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.27■□□□□ 0.35
UPF1-210ENST00000600689 HMGN4O00479 90 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 C1GALT1C1LP0DN25 315 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 GABRA5P31644 462 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 SLC1A3P43003 542 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 NTRK2Q16620 822 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 SMARCD3Q6STE5 483 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 ESPNLQ6ZVH7 1005 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 PLEKHM3Q6ZWE6 761 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 SYT9Q86SS6 491 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 GPR135Q8IZ08 494 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 BBS10Q8TAM1 723 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 CYB5D2Q8WUJ1 264 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 ZNF354BQ96LW1 612 aa17.27■□□□□ 0.35
UPF1-210ENST00000600689 PPIEQ9UNP9 301 aaKnown RBP17.27■□□□□ 0.35
UPF1-210ENST00000600689 PRAMEF27A3QJZ7 478 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 HYAL3O43820 417 aaPredicted RBP17.26■□□□□ 0.35
UPF1-210ENST00000600689 SLCO2B1O94956 709 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 ACP2P11117 423 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 GPR4P46093 362 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 ARHGEF6Q15052 776 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 C12orf66Q96MD2 445 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 MED20Q9H944 212 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 EIF4EP06730 217 aaKnown RBP17.26■□□□□ 0.35
UPF1-210ENST00000600689 GNSP15586 552 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 SHC1P29353 583 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 MAPK8P45983 427 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 C21orf58P58505 322 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 CRYZQ08257 329 aaKnown RBP17.26■□□□□ 0.35
UPF1-210ENST00000600689 TMEM91Q6ZNR0 172 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 PRICKLE2Q7Z3G6 844 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 LSMEM1Q8N8F7 131 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 GALNT11Q8NCW6 608 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 DNAJA4Q8WW22 397 aaPredicted RBP17.26■□□□□ 0.35
UPF1-210ENST00000600689 APOBEC4Q8WW27 367 aaKnown RBP17.26■□□□□ 0.35
UPF1-210ENST00000600689 VOPP1Q96AW1 172 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 OR51I1Q9H343 314 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 HCFC1R1Q9NWW0 138 aa17.26■□□□□ 0.35
UPF1-210ENST00000600689 ERAL1O75616 437 aaKnown RBP17.25■□□□□ 0.35
UPF1-210ENST00000600689 KCNJ5P48544 419 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 PRMT2P55345 433 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 STXBP1P61764 594 aaKnown RBP17.25■□□□□ 0.35
UPF1-210ENST00000600689 TMEM115Q12893 351 aaPredicted RBP17.25■□□□□ 0.35
UPF1-210ENST00000600689 ZNF750Q32MQ0 723 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 MZT2AQ6P582 158 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 ADGRD2Q7Z7M1 963 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 IZUMO1Q8IYV9 350 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 ADGRF3Q8IZF5 1079 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 OR56A3Q8NH54 315 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 B3GNT2Q9NY97 397 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 SERTM1A2A2V5 107 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 FAM170BA6NMN3 283 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 SOCS6O14544 535 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 NPC1O15118 1278 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 PDPK1O15530 556 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 PRODHO43272 600 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 ATG13O75143 517 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 TSPAN9O75954 239 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 C8orf89P0DMQ9 161 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 GIFP27352 417 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 TALDO1P37837 337 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 TPBGQ13641 420 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 SLC27A4Q6P1M0 643 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 SLC36A4Q6YBV0 504 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 IDO2Q6ZQW0 420 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 ADCK2Q7Z695 626 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 RIT1Q92963 219 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 RFT1Q96AA3 541 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 ZNF607Q96SK3 696 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 SERHL2Q9H4I8 314 aa17.25■□□□□ 0.35
UPF1-210ENST00000600689 DDX31Q9H8H2 851 aaKnown RBP17.25■□□□□ 0.35
UPF1-210ENST00000600689 LSM7Q9UK45 103 aaKnown RBP17.25■□□□□ 0.35
UPF1-210ENST00000600689 SPATA2Q9UM82 520 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms