RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 GIMAP5Q96F15 307 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 JSRP1Q96MG2 331 aaPredicted RBP13.96□□□□□ -0.17
LIG1-219ENST00000600055 LMF2Q9BU23 707 aaKnown RBP13.96□□□□□ -0.17
LIG1-219ENST00000600055 DOHHQ9BU89 302 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 BHLHE41Q9C0J9 482 aaPredicted RBP13.96□□□□□ -0.17
LIG1-219ENST00000600055 CXorf36Q9H7Y0 433 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 IL1RL2Q9HB29 575 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 AIG1Q9NVV5 245 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 NTMQ9P121 344 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 OR10H1Q9Y4A9 318 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 SNX8Q9Y5X2 465 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 TENM4Q6N022 2769 aa13.96□□□□□ -0.17
LIG1-219ENST00000600055 PRRC2CQ9Y520 2896 aaKnown RBP13.95□□□□□ -0.18
LIG1-219ENST00000600055 GXYLT2A0PJZ3 443 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 CLEC18AA5D8T8 446 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 C2orf72A6NCS6 295 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 LRRC3CA6NJW4 275 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 EMC8O43402 210 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 CDC40O60508 579 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIG1-219ENST00000600055 TSPAN2O60636 221 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 DIAPH2O60879 1101 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 RFPL3SP0C7P2 107 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 IL12AP29459 219 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 MAGEA5P43359 124 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 PHC1P78364 1004 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 KRTCAP3Q53RY4 240 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 CLEC18BQ6UXF7 455 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 FGD2Q7Z6J4 655 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 CHERPQ8IWX8 916 aaKnown RBP13.95□□□□□ -0.18
LIG1-219ENST00000600055 CLECL1Q8IZS7 167 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 CLEC18CQ8NCF0 446 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 ACTRT2Q8TDY3 377 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 EFHD2Q96C19 240 aaPredicted RBP13.95□□□□□ -0.18
LIG1-219ENST00000600055 OTUB1Q96FW1 271 aaPredicted RBP13.95□□□□□ -0.18
LIG1-219ENST00000600055 C16orf58Q96GQ5 468 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 MAGEB18Q96M61 343 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 RILPQ96NA2 401 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 COL21A1Q96P44 957 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 ADOQ96SZ5 270 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 YIPF4Q9BSR8 244 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 ANGPTL4Q9BY76 406 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 C3orf14Q9HBI5 128 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 ZCCHC3Q9NUD5 404 aaKnown RBP13.95□□□□□ -0.18
LIG1-219ENST00000600055 GPR45Q9Y5Y3 372 aa13.95□□□□□ -0.18
LIG1-219ENST00000600055 HELZ2Q9BYK8 2649 aaKnown RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 UBR5O95071 2799 aaPredicted RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 ANKRD33BA6NCL7 494 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 OR6C70A6NIJ9 312 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 ACOT7O00154 380 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 CFLARO15519 480 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 TRIM3O75382 744 aaPredicted RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 CELA3AP09093 270 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 ACP2P11117 423 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 IL12BP29460 328 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 GABRA3P34903 492 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 PTGDSP41222 190 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 HBA1P69905 142 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 UBAP2LQ14157 1087 aaKnown RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 ZNHIT3Q15649 155 aaPredicted RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 LSM12Q3MHD2 195 aaKnown RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 SPANXN4Q5MJ08 99 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 C1QL3Q5VWW1 255 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 MFSD12Q6NUT3 480 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 EPGNQ6UW88 154 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 SLC22A16Q86VW1 577 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 ANKRD46Q86W74 232 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 GHDCQ8N2G8 530 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 FAM26EQ8N5C1 309 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 NATD1Q8N6N6 113 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 CEP70Q8NHQ1 597 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 PSMA8Q8TAA3 256 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 PIK3R3Q92569 461 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 SLC9A6Q92581 669 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 NTNG2Q96CW9 530 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 SLC35A4Q96G79 324 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 MS4A4EQ96PG1 132 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 SECISBP2Q96T21 854 aaKnown RBP13.94□□□□□ -0.18
LIG1-219ENST00000600055 METTL7AQ9H8H3 244 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 ZDHHC11Q9H8X9 412 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 GALNT9Q9HCQ5 603 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 ZFP64Q9NPA5 681 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 CBLCQ9ULV8 474 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 MAPRE3Q9UPY8 281 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 LIPGQ9Y5X9 500 aa13.94□□□□□ -0.18
LIG1-219ENST00000600055 EML6Q6ZMW3 1958 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 A0A1B0GTH9 108 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 SCN2BO60939 215 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 STSP08842 583 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 RNF224P0DH78 156 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 CYP4B1P13584 511 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 KRT20P35900 424 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 MAP3K8P41279 467 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 KIR3DL1P43629 444 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 RFX3P48380 749 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 CCT3P49368 545 aaKnown RBP13.93□□□□□ -0.18
LIG1-219ENST00000600055 IDH3AP50213 366 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 DGKQP52824 942 aa13.93□□□□□ -0.18
LIG1-219ENST00000600055 CLNS1AP54105 237 aaKnown RBP13.93□□□□□ -0.18
LIG1-219ENST00000600055 RPP38P78345 283 aaKnown RBP13.93□□□□□ -0.18
LIG1-219ENST00000600055 HYAL4Q2M3T9 481 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms