RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 RNASET2O00584 256 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 DIAPH2O60879 1101 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 TRIM3O75382 744 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 TGDSO95455 350 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 CRYABP02511 175 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 MRPL19P49406 292 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 NME5P56597 212 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 ZNF155Q12901 538 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 GAB1Q13480 694 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 PDCD4Q53EL6 469 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 CMPK2Q5EBM0 449 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 PRAMEF20Q5VT98 475 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 MFSD12Q6NUT3 480 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 FGD2Q7Z6J4 655 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 POGLUT1Q8NBL1 392 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 NUP43Q8NFH3 380 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 CEP70Q8NHQ1 597 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 STON2Q8WXE9 905 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 TMBIM1Q969X1 311 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 C16orf58Q96GQ5 468 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 SECISBP2Q96T21 854 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 FAM173AQ9BQD7 235 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 DPY30Q9C005 99 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 PLSCR2Q9NRY7 297 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 TUBA8Q9NY65 449 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 OR6C70A6NIJ9 312 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 EMC8O43402 210 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 NKX2-2O95096 273 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 C1QCP02747 245 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 ACP2P11117 423 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 GPC1P35052 558 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 CASP3P42574 277 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 NRG3P56975 720 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 PLCXD2Q0VAA5 305 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 PGS1Q32NB8 556 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 CGB2Q6NT52 195 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 SLC44A2Q8IWA5 706 aaPredicted RBP17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 FAM13CQ8NE31 585 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 OR5M3Q8NGP4 307 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 GPR137Q96N19 417 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 PRPF18Q99633 342 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 ANGPTL4Q9BY76 406 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 TTTY12Q9BZ98 90 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 TSPAN10Q9H1Z9 355 aaPredicted RBP17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 SERHL2Q9H4I8 314 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 ZDHHC11Q9H8X9 412 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 GPATCH2Q9NW75 528 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 CNIH4Q9P003 139 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 VPS4AQ9UN37 437 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 MAPRE3Q9UPY8 281 aa17.89■□□□□ 0.45
SHKBP1-221ENST00000599833 GXYLT2A0PJZ3 443 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 E9PBE3 544 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 IGKV1D-16P01601 117 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 P04436 131 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 RFPL3SP0C7P2 107 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 ZNF24P17028 368 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 DDX5P17844 614 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 MAN2A2P49641 1150 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 AQP5P55064 265 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 ATCAYQ86WG3 371 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 FAM98AQ8NCA5 519 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 SLC16A11Q8NCK7 471 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 OR52N2Q8NGI0 321 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 RFWD2Q8NHY2 731 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 FAM110BQ8TC76 370 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 MS4A4EQ96PG1 132 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 CCDC28BQ9BUN5 200 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 CCDC134Q9H6E4 229 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 TCF7L2Q9NQB0 619 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 PCNX3Q9H6A9 2034 aa17.88■□□□□ 0.45
SHKBP1-221ENST00000599833 ANKUB1A6NFN9 424 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 CAPN14A8MX76 684 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 HS6ST1O60243 411 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 IDO1P14902 403 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 CD1EP15812 388 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 KIR3DL1P43629 444 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 TMED10P49755 219 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 DGKQP52824 942 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 CLNS1AP54105 237 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 GAS1P54826 345 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 ALDH6A1Q02252 535 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 DUSP5Q16690 384 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 GSTA3Q16772 222 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 DPY19L1Q2PZI1 675 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 FAM174BQ3ZCQ3 159 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 NXNQ6DKJ4 435 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 NUP54Q7Z3B4 507 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 ANKRD46Q86W74 232 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 TMEM251Q8N6I4 163 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 OR9I1Q8NGQ6 314 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 SFXN5Q8TD22 340 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 PIK3R3Q92569 461 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 DIO2Q92813 273 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 COL21A1Q96P44 957 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 ADOQ96SZ5 270 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 ZNF385DQ9H6B1 395 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 IL1RL2Q9HB29 575 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 NEUROD4Q9HD90 331 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 EQTNQ9NQ60 294 aa17.87■□□□□ 0.45
SHKBP1-221ENST00000599833 SERHLQ9NQF3 203 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms