RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 LOC102723996A0A087X1L8 192 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 TMEM200CA6NKL6 621 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 C17orf105B2RV13 164 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 C21orf140B9A014 251 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 NME4O00746 187 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 GYG2O15488 501 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 LRRTM2O43300 516 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 EMC8O43402 210 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ZG16O60844 167 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 PSMG1O95456 288 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CBX7O95931 251 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CYC1P08574 325 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 IFI6P09912 130 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 TNNI3P19429 210 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 DLSTP36957 453 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 RASSF2P50749 326 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 GPR143P51810 404 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CASP9P55211 416 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 OR4D2P58180 307 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 MTPNP58546 118 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 FUT7Q11130 342 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 DNASE1L3Q13609 305 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF267Q14586 743 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 EXOSC7Q15024 291 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ELAVL1Q15717 326 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 SFT2D3Q587I9 215 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 COX20Q5RI15 118 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 SAXO2Q658L1 398 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 JMJD6Q6NYC1 403 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 C16orf89Q6UX73 402 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 TMEM64Q6YI46 380 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CPEB2Q7Z5Q1 589 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 GALNT12Q8IXK2 581 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 KIF2BQ8N4N8 673 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 TRIML2Q8N7C3 387 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF321PQ8N8H1 164 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF615Q8N8J6 731 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 Q8NA96 180 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 C7orf57Q8NEG2 295 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 NFAM1Q8NET5 270 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 NUP43Q8NFH3 380 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 OR8J3Q8NGG0 315 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 PNPT1Q8TCS8 783 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 SFXN5Q8TD22 340 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF721Q8TF20 911 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 C8orf44Q96CB5 159 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 NEURL3Q96EH8 262 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 C16orf58Q96GQ5 468 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 SENP5Q96HI0 755 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CLPTM1LQ96KA5 538 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CDRT15Q96T59 188 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 PELOQ9BRX2 385 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 GPR87Q9BY21 358 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 SERHL2Q9H4I8 314 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 KAT8Q9H7Z6 458 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ADAP2Q9NPF8 381 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 SEMA3GQ9NS98 782 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 PTGFRNQ9P2B2 879 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 ABCD2Q9UBJ2 740 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 CD300AQ9UGN4 299 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 PACSIN3Q9UKS6 424 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 PCDHGA6Q9Y5G7 932 aa8.76□□□□□ -1.01
TRIM28-208ENST00000597172 MRPS18BQ9Y676 258 aaKnown RBP8.76□□□□□ -1.01
TRIM28-208ENST00000597172 NUP210LQ5VU65 1888 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 RNF103-CHMP3A0A140T963 221 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 ANKRD65E5RJM6 399 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SOCS6O14544 535 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 DNAJC8O75937 253 aaPredicted RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 DNAJB5O75953 348 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SLITRK5O94991 958 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 IGKV3-11P04433 115 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 COX6B1P14854 86 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 GPX2P18283 190 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 MMP11P24347 488 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SSTR4P31391 388 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SOAT1P35610 550 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 MAP3K8P41279 467 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 FOLR3P41439 243 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 EMDP50402 254 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SLC7A2P52569 658 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 PRKAG1P54619 331 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 RPS15P62841 145 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 RPS26P62854 115 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 CEACAM7Q14002 265 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 SSPNQ14714 243 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 PCOLCEQ15113 449 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 RGNQ15493 299 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 ADRM1Q16186 407 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 EXOSC6Q5RKV6 272 aaKnown RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 PGM2L1Q6PCE3 622 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 KIRREL2Q6UWL6 708 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF771Q7L3S4 317 aaPredicted RBP8.75□□□□□ -1.01
TRIM28-208ENST00000597172 PPP1R32Q7Z5V6 425 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 CALHM3Q86XJ0 350 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 RNF130Q86XS8 419 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 VWA5B2Q8N398 1253 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 OR52R1Q8NGF1 315 aa8.75□□□□□ -1.01
TRIM28-208ENST00000597172 OR52N2Q8NGI0 321 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms