RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CAPRIN1Q14444 709 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 DUSP5Q16690 384 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 RUNDC3AQ59EK9 446 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 CT45A2Q5DJT8 189 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 ATAD3BQ5T9A4 648 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TNFAIP8L2Q6P589 184 aaPredicted RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 OPN5Q6U736 354 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 NPSR1Q6W5P4 371 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 MSRB3Q8IXL7 192 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 BEST3Q8N1M1 668 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TMEM156Q8N614 296 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 COX18Q8N8Q8 333 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 SLC16A11Q8NCK7 471 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 OR52N2Q8NGI0 321 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 MIPOL1Q8TD10 442 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 ASB15Q8WXK1 588 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TM9SF4Q92544 642 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 HOXB13Q92826 284 aaPredicted RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 OTUB1Q96FW1 271 aaPredicted RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 NSL1Q96IY1 281 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 ANKRD27Q96NW4 1050 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 OR7D2Q96RA2 312 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 SMAD5Q99717 465 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 SH3GL1Q99961 368 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 THUMPD3Q9BV44 507 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 OR51I1Q9H343 314 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 EXD2Q9NVH0 621 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 MRTO4Q9UKD2 239 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 CBLCQ9ULV8 474 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 ZNF451Q9Y4E5 1061 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 NPFFR2Q9Y5X5 522 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 TPRP12270 2363 aaKnown RBP12.59□□□□□ -0.39
VMP1-210ENST00000589823 CFAP47Q6ZTR5 3102 aa12.59□□□□□ -0.39
VMP1-210ENST00000589823 A8MVJ9 347 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 CDK2AP1O14519 115 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 ASNA1O43681 348 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 MAN1A2O60476 641 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 UNC5CO95185 931 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 CBX6O95503 412 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 NADKO95544 446 aaPredicted RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 OR12D1P0DN82 309 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 TRHRP34981 398 aaPredicted RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 MAP3K8P41279 467 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 PSMD4P55036 377 aaKnown RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 POU6F2P78424 691 aaPredicted RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 OC90Q02509 493 aaPredicted RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 FADDQ13158 208 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 KCNAB2Q13303 367 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 DECR1Q16698 335 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 CYP27C1Q4G0S4 372 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.58□□□□□ -0.4
VMP1-210ENST00000589823 HACD2Q6Y1H2 254 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 GPALPP1Q8IXQ4 340 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 DND1Q8IYX4 353 aaKnown RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 PRR22Q8IZ63 422 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 SLC34A3Q8N130 599 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 HORMAD2Q8N7B1 307 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 OR5D16Q8NGK9 328 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 XAGE5Q8WWM1 108 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 PIK3R3Q92569 461 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 CDS1Q92903 461 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 SLC35A4Q96G79 324 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 HOPXQ9BPY8 73 aaPredicted RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 CPPED1Q9BRF8 314 aaPredicted RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 UTP23Q9BRU9 249 aaKnown RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 SERHL2Q9H4I8 314 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 HPF1Q9NWY4 346 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 THUMPD1Q9NXG2 353 aaKnown RBP12.58□□□□□ -0.4
VMP1-210ENST00000589823 PCDHGB7Q9Y5F8 929 aa12.58□□□□□ -0.4
VMP1-210ENST00000589823 NUP214P35658 2090 aaPredicted RBP12.57□□□□□ -0.4
VMP1-210ENST00000589823 C15orf38-AP3S2A0A0A6YYH1 394 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 GXYLT2A0PJZ3 443 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 TMEM247A6NEH6 219 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 FXYD1O00168 92 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 REM1O75628 298 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 OR6B1O95007 311 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 WDPCPO95876 746 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 AK1P00568 194 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 C1QCP02747 245 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 ETFAP13804 333 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 NAGAP17050 411 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 CALB2P22676 271 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 ABCD3P28288 659 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 IL12BP29460 328 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 PIGAP37287 484 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 SOX3P41225 446 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 MAN2A2P49641 1150 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 HLCSP50747 726 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 MTPNP58546 118 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 ARG2P78540 354 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 MRPS22P82650 360 aaKnown RBP12.57□□□□□ -0.4
VMP1-210ENST00000589823 RGNQ15493 299 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 LINC00303Q3SY05 128 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 COX20Q5RI15 118 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 EXOSC6Q5RKV6 272 aaKnown RBP12.57□□□□□ -0.4
VMP1-210ENST00000589823 NANOGP8Q6NSW7 305 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 IL20RBQ6UXL0 311 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 C16orf62Q7Z3J2 963 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 ARPINQ7Z6K5 226 aa12.57□□□□□ -0.4
VMP1-210ENST00000589823 OR8J3Q8NGG0 315 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms