RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 CDSNQ15517 529 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 KRT71Q3SY84 523 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 KANK2Q63ZY3 851 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 LARP4Q71RC2 724 aaKnown RBP eCLIP11.32□□□□□ -0.6
SS18-225ENST00000585121 CCDC71Q8IV32 467 aaPredicted RBP11.32□□□□□ -0.6
SS18-225ENST00000585121 RPRMLQ8N4K4 120 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 OR7G2Q8NG99 324 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 PPP1R14CQ8TAE6 165 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.32□□□□□ -0.6
SS18-225ENST00000585121 NODALQ96S42 347 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 ADOQ96SZ5 270 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 CCT7Q99832 543 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 SPOCK3Q9BQ16 436 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 TMEM109Q9BVC6 243 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 ANKRA2Q9H9E1 313 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 SLC17A7Q9P2U7 560 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 MRTO4Q9UKD2 239 aaKnown RBP11.32□□□□□ -0.6
SS18-225ENST00000585121 CCL27Q9Y4X3 112 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 PKDREJQ9NTG1 2253 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 NINQ8N4C6 2090 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 AHRRA9YTQ3 701 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 PLOD2O00469 737 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 SNPHO15079 494 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 RGS16O15492 202 aaPredicted RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 PDPK1O15530 556 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 CBR3O75828 277 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 CT45A8P0DMV1 189 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 CT45A9P0DMV2 189 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 GLI4P10075 376 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 ENDOUP21128 410 aaKnown RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 MAPK1P28482 360 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 MC3RP41968 323 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 ASMTP46597 345 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 ZFP36L2P47974 494 aaKnown RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 PNLIPRP2P54317 469 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 CORO7P57737 925 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 RPL38P63173 70 aaKnown RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 KIAA0040Q15053 153 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 GALNTL6Q49A17 601 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 CT45A2Q5DJT8 189 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 ARL13AQ5H913 290 aaPredicted RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 SH2D4BQ5SQS7 431 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 TMEM107Q6UX40 140 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 Q6ZSR9 355 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 ULK2Q8IYT8 1036 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 ZFP28Q8NHY6 868 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 TWIST2Q8WVJ9 160 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 GFM2Q969S9 779 aaKnown RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 PPCDCQ96CD2 204 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 SLC35A4Q96G79 324 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 AMDHD1Q96NU7 426 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 MECRQ9BV79 373 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 UBQLN3Q9H347 655 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 GLIPR2Q9H4G4 154 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 C3orf14Q9HBI5 128 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 C19orf53Q9UNZ5 99 aaPredicted RBP11.31□□□□□ -0.6
SS18-225ENST00000585121 MAPRE3Q9UPY8 281 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 PTGDR2Q9Y5Y4 395 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 EML6Q6ZMW3 1958 aa11.31□□□□□ -0.6
SS18-225ENST00000585121 TTC36A6NLP5 189 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 TMEM114B3SHH9 223 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 C19orf84I3L1E1 186 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 AKAP10O43572 662 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 CHRNGP07510 517 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 PRF1P14222 555 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 PTPN6P29350 595 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 SSTR2P30874 369 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 GPC1P35052 558 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 KIR3DL1P43629 444 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 PSMD4P55036 377 aaKnown RBP11.3□□□□□ -0.6
SS18-225ENST00000585121 DECR1Q16698 335 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 CYP27C1Q4G0S4 372 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 RIPPLY2Q5TAB7 128 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 FNDC7Q5VTL7 733 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 DESI1Q6ICB0 168 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 RTL6Q6ICC9 239 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 MEX3BQ6ZN04 569 aaKnown RBP11.3□□□□□ -0.6
SS18-225ENST00000585121 R3HCC1LQ7Z5L2 792 aaKnown RBP11.3□□□□□ -0.6
SS18-225ENST00000585121 ABTB1Q969K4 478 aaPredicted RBP11.3□□□□□ -0.6
SS18-225ENST00000585121 ELP4Q96EB1 424 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 ZBED6CLQ96FA7 236 aaPredicted RBP11.3□□□□□ -0.6
SS18-225ENST00000585121 PKNOX2Q96KN3 472 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 EGLN2Q96KS0 407 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 PPP3R2Q96LZ3 170 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 TSSK3Q96PN8 268 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 TIMP4Q99727 224 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 UCK2Q9BZX2 261 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 ACBD3Q9H3P7 528 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 REEP4Q9H6H4 257 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 GALNT9Q9HCQ5 603 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 Q9N2J8 555 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 SH3BP4Q9P0V3 963 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 EXO1Q9UQ84 846 aaKnown RBP11.3□□□□□ -0.6
SS18-225ENST00000585121 CAMK2AQ9UQM7 478 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 SLC6A5Q9Y345 797 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 FAM215AQ9Y5M1 114 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 DNAJC15Q9Y5T4 150 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 ABCA12Q86UK0 2595 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 MYO9AB2RTY4 2548 aa11.3□□□□□ -0.6
SS18-225ENST00000585121 C2orf72A6NCS6 295 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms