RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 P2RX2Q9UBL9 471 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 BCAP29Q9UHQ4 241 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 PILRBQ9UKJ0 227 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 CNOT11Q9UKZ1 510 aaKnown RBP5.21□□□□□ -1.58
VPS53-219ENST00000576019 KIAA1257Q9ULG3 409 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 B9D1Q9UPM9 204 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 PLCL2Q9UPR0 1127 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 DLGAP4Q9Y2H0 992 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 VPS13CQ709C8 3753 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 DCHS2Q6V1P9 2916 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 ZNF814B7Z6K7 855 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 BUD23O43709 281 aaKnown RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 RNASEH1O60930 286 aaKnown RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 CLN5O75503 358 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 EPOP01588 193 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 POLR2MP0CAP2 368 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SMIM10L2AP0DMW4 78 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SMIM10L2BP0DMW5 78 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 MYOD1P15172 320 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SSTR2P30874 369 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 ACADVLP49748 655 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 ETV1P50549 477 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 CLDN17P56750 224 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 KLC1Q07866 573 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 TRAP1Q12931 704 aaKnown RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 TAF10Q12962 218 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 TRAF1Q13077 416 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SELPLGQ14242 412 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 HEPACAMQ14CZ8 416 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 EXOSC7Q15024 291 aaKnown RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 ITPRIPL2Q3MIP1 535 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 ARMC12Q5T9G4 340 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 LIPJQ5W064 366 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 TIPARPQ7Z3E1 657 aaKnown RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 PRUNE1Q86TP1 453 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SPATA2LQ8IUW3 424 aaPredicted RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 IQCF2Q8IXL9 164 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SLC43A2Q8N370 569 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 ARL14Q8N4G2 192 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 OR4L1Q8NH43 312 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 OR52J3Q8NH60 311 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 PPTC7Q8NI37 304 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 RAPGEF5Q92565 580 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 RASD2Q96D21 266 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 IGSF21Q96ID5 467 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 LURAP1Q96LR2 239 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 CASD1Q96PB1 797 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 NPAS2Q99743 824 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 C1QTNF7Q9BXJ2 289 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 GSDMCQ9BYG8 508 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 MIS12Q9H081 205 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 GANQ9H2C0 597 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 MARCH7Q9H992 704 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 FANCEQ9HB96 536 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 A4GALTQ9NPC4 353 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 SLC52A3Q9NQ40 469 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 RNF14Q9UBS8 474 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 MRTO4Q9UKD2 239 aaKnown RBP5.2□□□□□ -1.58
VPS53-219ENST00000576019 AMDHD2Q9Y303 409 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 ETV7Q9Y603 341 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 VWA8A3KMH1 1905 aa5.2□□□□□ -1.58
VPS53-219ENST00000576019 A0A075B6Q4 140 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 MBLAC1A4D2B0 266 aaPredicted RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 OR52A4PA6NMU1 304 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 PRR32B1ATL7 298 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 M0QX08 132 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 KLF11O14901 512 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 CASC3O15234 703 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 SMAD6O43541 496 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 DNAJB6O75190 326 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 PRKRAO75569 313 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 NEBLO76041 1014 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 GLUD1P00367 558 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 CSF2P04141 144 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 CCDC130P13994 396 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 ANPEPP15144 967 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 PCMT1P22061 227 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 UQCRC2P22695 453 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 CCT6AP40227 531 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 RFX5P48382 616 aaPredicted RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 LIMK2P53671 638 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 NAPAP54920 295 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 ZP1P60852 638 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 RPS18P62269 152 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 ID2Q02363 134 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 TGM3Q08188 693 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 NFATC2Q13469 925 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 P2RY14Q15391 338 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 CAMK4Q16566 473 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 POM121L1PQ3SYA9 428 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 BCL7AQ4VC05 210 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 TMEM35AQ53FP2 167 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 WASHC2DQ5SRD0 308 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 C20orf194Q5TEA3 1177 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 HECTD2Q5U5R9 776 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 FNDC7Q5VTL7 733 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 SLC39A4Q6P5W5 647 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 Q6ZTK2 550 aa5.19□□□□□ -1.58
VPS53-219ENST00000576019 TRMT1LQ7Z2T5 733 aaKnown RBP5.19□□□□□ -1.58
VPS53-219ENST00000576019 LHFPL4Q7Z7J7 247 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms