RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 PCDH17O14917 1159 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 GFRA3O60609 400 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 SERPINB7O75635 380 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 H6PDO95479 791 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 CHRM4P08173 479 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 RAP2AP10114 183 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 ETS2P15036 469 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 GABRA3P34903 492 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 SLC37A1P57057 533 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 SELENOWP63302 87 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 FUT5Q11128 374 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 RPS26P11Q5JNZ5 115 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 RNF111Q6ZNA4 994 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 LRRC74BQ6ZQY2 392 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 TIPARPQ7Z3E1 657 aaKnown RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 CPEB2Q7Z5Q1 589 aaKnown RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 GALNT10Q86SR1 603 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 GALNT15Q8N3T1 639 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 ESX1Q8N693 406 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 COX18Q8N8Q8 333 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 CHDHQ8NE62 594 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 OR1N1Q8NGS0 311 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 OR2Y1Q8NGV0 311 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 C16orf52Q8NHV5 167 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 GPR151Q8TDV0 419 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 ZNF721Q8TF20 911 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 ADAMTS14Q8WXS8 1223 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 LZICQ8WZA0 190 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 TAMM41Q96BW9 452 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 SLC47A1Q96FL8 570 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 TREX2Q9BQ50 279 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 SPATA5L1Q9BVQ7 753 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 BTBD2Q9BX70 525 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 POLR1BQ9H9Y6 1135 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 FOXJ2Q9P0K8 574 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 C6orf203Q9P0P8 240 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 COPS7AQ9UBW8 275 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 CDV3Q9UKY7 258 aaKnown RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 PADI2Q9Y2J8 665 aa12.72□□□□□ -0.37
CCDC40-209ENST00000573474 PTRH2Q9Y3E5 179 aaKnown RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 RIF1Q5UIP0 2472 aaKnown RBP12.72□□□□□ -0.37
CCDC40-209ENST00000573474 FAM149AA5PLN7 773 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 SAGE2PA6NJ88 616 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 OR6C76A6NM76 312 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 KLF7O75840 302 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-209ENST00000573474 IGHEP01854 428 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 FCGR1AP12314 374 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 FOLR3P41439 243 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 CRYBA2P53672 197 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 POU6F2P78424 691 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-209ENST00000573474 HPCAP84074 193 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 PSG6Q00889 435 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 PQLC1Q8N2U9 271 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 FAM86B1Q8N7N1 296 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 ZNF321PQ8N8H1 164 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 CT55Q8WUE5 264 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 PMM1Q92871 262 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 SDF2Q99470 211 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 DOHHQ9BU89 302 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 NUDT9Q9BW91 350 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 CHID1Q9BWS9 393 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 RUBCNLQ9H714 662 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 MTHFD2LQ9H903 347 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-209ENST00000573474 STOML1Q9UBI4 398 aa12.71□□□□□ -0.37
CCDC40-209ENST00000573474 PPIEQ9UNP9 301 aaKnown RBP12.71□□□□□ -0.37
CCDC40-209ENST00000573474 GPC6Q9Y625 555 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-209ENST00000573474 LOC102723996A0A087X1L8 192 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 IGHV3-20A0A0C4DH32 117 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 GXYLT2A0PJZ3 443 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 TMEM229AB2RXF0 380 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 TIPRLO75663 272 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 MFN2O95140 757 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 OPN1SWP03999 348 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 UMODP07911 640 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 GUSBP08236 651 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 TCN2P20062 427 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 FASP25445 335 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 RBMS1P29558 406 aaKnown RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 TRHRP34981 398 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 PPICP45877 212 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 GPR143P51810 404 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 DCAF7P61962 342 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 GABREP78334 506 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 CHRNEQ04844 493 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 DCST2Q5T1A1 773 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 AP1ARQ63HQ0 302 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 PAPD4Q6PIY7 484 aaKnown RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 FKBP9P1Q75LS8 142 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 TMPRSS7Q7RTY8 843 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 ARMC8Q8IUR7 673 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 NLGN4XQ8N0W4 816 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 NFAM1Q8NET5 270 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 NLGN4YQ8NFZ3 816 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 OR10Q1Q8NGQ4 319 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 RASSF5Q8WWW0 418 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 PIK3R3Q92569 461 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 TPD52L3Q96J77 140 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 HSH2DQ96JZ2 352 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 COL21A1Q96P44 957 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 BTBD9Q96Q07 612 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms