RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZNF407Q9C0G0 2248 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 CENPVL1A0A0U1RR11 272 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 A8MUI8 341 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 NPIPB9F8W1W9 429 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 COQ9O75208 318 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 TNFRSF21O75509 655 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 BCAS2O75934 225 aaPredicted RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 NEURL1O76050 574 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 WDPCPO95876 746 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 F10P00742 488 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ALPPP05187 535 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 NUDT7P0C024 238 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 FBXO45P0C2W1 286 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 DDX5P17844 614 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 GPX2P18283 190 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 SLC6A2P23975 617 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ABCD3P28288 659 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 PRDX6P30041 224 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 GPC1P35052 558 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 CPOXP36551 454 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 CD96P40200 585 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 NR0B1P51843 470 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 CBX1P83916 185 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 PLAURQ03405 335 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 KCNAB2Q13303 367 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 TP53BP2Q13625 1128 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 TUBA3CQ13748 450 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 CAPRIN1Q14444 709 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 KRT72Q14CN4 511 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ADRM1Q16186 407 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 TRMT5Q32P41 509 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS35-211ENST00000569950 NANOGP8Q6NSW7 305 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 CDC73Q6P1J9 531 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 TUBA3EQ6PEY2 450 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ISLR2Q6UXK2 745 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 LINC00696Q6ZRV3 163 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ZNF621Q6ZSS3 439 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 MDGA2Q7Z553 956 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 DHDDSQ86SQ9 333 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 RNF130Q86XS8 419 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 PRR22Q8IZ63 422 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 RBMXL3Q8N7X1 1067 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 PNPT1Q8TCS8 783 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 PIK3R3Q92569 461 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 MOAP1Q96BY2 351 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 LCORQ96JN0 433 aaPredicted RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 ANKRD27Q96NW4 1050 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 BBC3Q96PG8 261 aaPredicted RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 SIGLEC12Q96PQ1 595 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 LRRC37BQ96QE4 947 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 OR7D2Q96RA2 312 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 CGREF1Q99674 301 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ACTRT3Q9BYD9 372 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 RTN4RQ9BZR6 473 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 NANOGQ9H9S0 305 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 GIN1Q9NXP7 522 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 FLRT3Q9NZU0 649 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 KCNE5Q9UJ90 142 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 LEF1Q9UJU2 399 aaPredicted RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 VPS4AQ9UN37 437 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 TP53TG5Q9Y2B4 290 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 YARS2Q9Y2Z4 477 aaKnown RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 CHCHD2Q9Y6H1 151 aaPredicted RBP8.56□□□□□ -1.04
VPS35-211ENST00000569950 SVILO95425 2214 aa8.56□□□□□ -1.04
VPS35-211ENST00000569950 ZNF462Q96JM2 2506 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 A0A0G2JMM0 328 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 A0A1W2PPB8 328 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 A0A1W2PRS3 328 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 C17orf51A8MQB3 221 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 BBIP1A8MTZ0 92 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 KIR3DP1A8MWS1 328 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 MRASO14807 208 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 GCM2O75603 506 aaPredicted RBP8.55□□□□□ -1.04
VPS35-211ENST00000569950 DCTN3O75935 186 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 CBX6O95503 412 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 SOAT1P35610 550 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PIGAP37287 484 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PTGDSP41222 190 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 CPA2P48052 419 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 HLCSP50747 726 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PRKAG1P54619 331 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PRR5P85299 388 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 RHDQ02161 417 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 ZNF155Q12901 538 aaPredicted RBP8.55□□□□□ -1.04
VPS35-211ENST00000569950 CYLC2Q14093 348 aaPredicted RBP8.55□□□□□ -1.04
VPS35-211ENST00000569950 RGNQ15493 299 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 NTRK2Q16620 822 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 MEP1AQ16819 746 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 RABL3Q5HYI8 236 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 C6orf10Q5SRN2 563 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 AGAP7PQ5VUJ5 663 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 ZCCHC12Q6PEW1 402 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 HACD2Q6Y1H2 254 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 SLC29A4Q7RTT9 530 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 CALHM3Q86XJ0 350 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PTOV1Q86YD1 416 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 SLC44A2Q8IWA5 706 aaPredicted RBP8.55□□□□□ -1.04
VPS35-211ENST00000569950 SLC5A8Q8N695 610 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 BCORP1Q8N888 145 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms