RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 MYF5P13349 255 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HLA-EP13747 358 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FOLR2P14207 255 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ZNF26P17031 533 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 AOC1P19801 751 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 UQCRC2P22695 453 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ITGA3P26006 1051 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KLRC1P26715 233 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HLA-DMAP28067 261 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HSD11B1P28845 292 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CTGFP29279 349 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 BDKRB2P30411 391 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 LCN1P31025 176 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 AHRP35869 848 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CAPGP40121 348 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ETV6P41212 452 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 GPR4P46093 362 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 RABIFP47224 123 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 QARSP47897 775 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 CDC34P49427 236 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 CCT4P50991 539 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 XKP51811 444 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 NR0B1P51843 470 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 RAB25P57735 213 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SELENOVP59797 346 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CD81P60033 236 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PTENP60484 403 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CXCR4P61073 352 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MRPS22P82650 360 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 GTF2BQ00403 316 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 REEP5Q00765 189 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 E2F1Q01094 437 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FMO1Q01740 532 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PRKCDQ05655 676 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ELP6Q0PNE2 266 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SLC10A2Q12908 348 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 GPR17Q13304 367 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MADCAM1Q13477 382 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ARHGEF7Q14155 803 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 P2RY14Q15391 338 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MED22Q15528 200 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SLC1A5Q15758 541 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MPPED2Q15777 294 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 UBE2SQ16763 222 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 NKAIN1Q4KMZ8 207 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C1orf141Q5JVX7 400 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 EOGTQ5NDL2 527 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CERCAMQ5T4B2 595 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 AVPI1Q5T686 147 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C9orf64Q5T6V5 341 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SPATA31A1Q5TZJ5 1347 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SPATA31A5Q5VU36 1347 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MFSD14CQ5VZR4 134 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 RAP1GAP2Q684P5 730 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 LAMTOR1Q6IAA8 161 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 EDC4Q6P2E9 1401 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 PSRC1Q6PGN9 363 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 SHC4Q6S5L8 630 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TSSK4Q6SA08 328 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SCIMPQ6UWF3 145 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 METTL7BQ6UX53 244 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C16orf89Q6UX73 402 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 RBMS3Q6XE24 437 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 SCARA5Q6ZMJ2 495 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C17orf107Q6ZR85 190 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SH2D5Q6ZV89 423 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KCTD8Q6ZWB6 473 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 TMPRSS11FQ6ZWK6 438 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ARCQ7LC44 396 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SLC46A3Q7Z3Q1 461 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 HSD17B13Q7Z5P4 300 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 ISCA2Q86U28 154 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ZC3HC1Q86WB0 502 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 KLBQ86Z14 1044 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SPATA31A7Q8IWB4 1347 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SKA3Q8IX90 412 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CDK20Q8IZL9 346 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C8orf59Q8N0T1 100 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 GCNT2Q8N0V5 402 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 MYCT1Q8N699 235 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 GDPD1Q8N9F7 314 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 FAM47BQ8NA70 645 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 C19orf18Q8NEA5 215 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 BPIFB6Q8NFQ5 453 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 OR4C15Q8NGM1 316 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SPATA22Q8NHS9 363 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 CYP2W1Q8TAV3 490 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 ITFG1Q8TB96 612 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 LKAAEAR1Q8TD35 194 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PAQR8Q8TEZ7 354 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 OIT3Q8WWZ8 545 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 PALLDQ8WX93 1383 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 SOCS4Q8WXH5 440 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 DPF1Q92782 380 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 NT5C3BQ969T7 300 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 KIAA1143Q96AT1 154 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 PHF21BQ96EK2 531 aa3.06□□□□□ -1.92
VPS35-208ENST00000568612 DAZAP1Q96EP5 407 aaKnown RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 PRR11Q96HE9 360 aaPredicted RBP3.06□□□□□ -1.92
VPS35-208ENST00000568612 TPD52L3Q96J77 140 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms