RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SLC35A4Q96G79 324 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 OR2B2Q9GZK3 357 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 JKAMPQ9P055 326 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 ST6GALNAC2Q9UJ37 374 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 CBLCQ9ULV8 474 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 STK38LQ9Y2H1 464 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 TIMM22Q9Y584 194 aa14.63□□□□□ -0.07
CLN3-229ENST00000567963 TUBAL3A6NHL2 446 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 TSPAN2O60636 221 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 NME6O75414 186 aaPredicted RBP14.62□□□□□ -0.07
CLN3-229ENST00000567963 CYP4B1P13584 511 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 TACR1P25103 407 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 HTR6P50406 440 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 GFRA1P56159 465 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 CORO7P57737 925 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 LCP2Q13094 533 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 DAZAP2Q15038 168 aaPredicted RBP14.62□□□□□ -0.07
CLN3-229ENST00000567963 GALNT18Q6P9A2 607 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 ENPP6Q6UWR7 440 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 ADGRE4PQ86SQ3 457 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 CDC20BQ86Y33 519 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 KIF18BQ86Y91 864 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 PLCZ1Q86YW0 608 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 RDH11Q8TC12 318 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 RMND5BQ96G75 393 aaPredicted RBP14.62□□□□□ -0.07
CLN3-229ENST00000567963 VSTM2LQ96N03 204 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 ADOQ96SZ5 270 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 TUBA1CQ9BQE3 449 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 SLC35C2Q9NQQ7 365 aa14.62□□□□□ -0.07
CLN3-229ENST00000567963 SETD2Q9BYW2 2564 aaPredicted RBP14.62□□□□□ -0.07
CLN3-229ENST00000567963 AKAP6Q13023 2319 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 PRRC2AP48634 2157 aaKnown RBP14.61□□□□□ -0.07
CLN3-229ENST00000567963 SERTM1A2A2V5 107 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 GOLGA8RI6L899 631 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 PLOD3O60568 738 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 ERN1O75460 977 aaKnown RBP14.61□□□□□ -0.07
CLN3-229ENST00000567963 ENO1P06733 434 aaKnown RBP14.61□□□□□ -0.07
CLN3-229ENST00000567963 GSTA1P08263 222 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 EPXP11678 715 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 TIA1P31483 386 aaKnown RBP eCLIP14.61□□□□□ -0.07
CLN3-229ENST00000567963 MPIP34949 423 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 PKNOX1P55347 436 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 SRYQ05066 204 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 ERCC6LQ2NKX8 1250 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 NPSR1Q6W5P4 371 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 IFNEQ86WN2 208 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 GOT1L1Q8NHS2 421 aaPredicted RBP14.61□□□□□ -0.07
CLN3-229ENST00000567963 ACMSDQ8TDX5 336 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 UCN2Q96RP3 112 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 KCNA7Q96RP8 456 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 GIMAP4Q9NUV9 329 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 SIRT5Q9NXA8 310 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 TAS2R10Q9NYW0 307 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 FBXL2Q9UKC9 423 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 MRPS18CQ9Y3D5 142 aaKnown RBP14.61□□□□□ -0.07
CLN3-229ENST00000567963 WIF1Q9Y5W5 379 aa14.61□□□□□ -0.07
CLN3-229ENST00000567963 CCDC151A5D8V7 595 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 EEF1E1-BLOC1S5C9J1V9 151 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 EEF1E1O43324 174 aaKnown RBP14.6□□□□□ -0.07
CLN3-229ENST00000567963 RCBTB2O95199 551 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 ANXA4P09525 319 aaPredicted RBP14.6□□□□□ -0.07
CLN3-229ENST00000567963 TMIGD3P0DMS9 266 aaPredicted RBP14.6□□□□□ -0.07
CLN3-229ENST00000567963 PYGBP11216 843 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 SRD5A2P31213 254 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 GSTM5P46439 218 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 DGKQP52824 942 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 PNLIPRP2P54317 469 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 PSPHP78330 225 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 SORDQ00796 357 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 BTKQ06187 659 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 FOXF2Q12947 444 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 EFR3AQ14156 821 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 SLC29A2Q14542 456 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 IFT20Q8IY31 132 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 OR7G2Q8NG99 324 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 LINC01560Q8TB33 94 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 RNF138Q8WVD3 245 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 TM9SF2Q99805 663 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 G6PC3Q9BUM1 346 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 TMUB1Q9BVT8 246 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 EBPLQ9BY08 206 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 GSTO2Q9H4Y5 243 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 FOLH1BQ9HBA9 442 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 TAS2R9Q9NYW1 312 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 DCDC2Q9UHG0 476 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 EDARQ9UNE0 448 aa14.6□□□□□ -0.07
CLN3-229ENST00000567963 H0Y3Z8 333 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 UBFD1O14562 309 aaKnown RBP14.59□□□□□ -0.07
CLN3-229ENST00000567963 CD99P14209 185 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 IL12BP29460 328 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 KRT20P35900 424 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 STARP49675 285 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 LHX2P50458 406 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 GAS1P54826 345 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 OR5M10Q6IEU7 315 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 AAGABQ6PD74 315 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 SCIMPQ6UWF3 145 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 LARP4Q71RC2 724 aaKnown RBP eCLIP14.59□□□□□ -0.07
CLN3-229ENST00000567963 FAM9CQ8IZT9 166 aa14.59□□□□□ -0.07
CLN3-229ENST00000567963 OR4N2Q8NGD1 307 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms