RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CLDN8P56748 225 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 TSPAN5P62079 268 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 RPS25P62851 125 aaKnown RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 RBBP4Q09028 425 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SFRP5Q5T4F7 317 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 RFLNAQ6ZTI6 216 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 BCDIN3DQ7Z5W3 292 aaKnown RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 TDHQ8IZJ6 230 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 LGI4Q8N135 537 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 HSD17B8Q92506 261 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 TIFAQ96CG3 184 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 C1GALT1C1Q96EU7 318 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 PPP3R2Q96LZ3 170 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 MND1Q9BWT6 205 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SUV39H2Q9H5I1 410 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 MED9Q9NWA0 146 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 BABAM2Q9NXR7 383 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 DNAJC27Q9NZQ0 273 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 PURGQ9UJV8 347 aaKnown RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 RNF215Q9Y6U7 377 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 LRRK1Q38SD2 2015 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SH3D21A4FU49 640 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SLC28A1O00337 649 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ATG12O94817 140 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 LCN1P31025 176 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SRP9P49458 86 aaKnown RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 RGS4P49798 205 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SELENOPP49908 381 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 CDH12P55289 794 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ZP1P60852 638 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 FGL1Q08830 312 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SLC27A4Q6P1M0 643 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 TPRG1Q6ZUI0 275 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 PTOV1Q86YD1 416 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ADGRG2Q8IZP9 1017 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 CHST14Q8NCH0 376 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 CHTF18Q8WVB6 975 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ZFPM2Q8WW38 1151 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 ECHDC3Q96DC8 303 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 MRPS24Q96EL2 167 aaKnown RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 SLC38A3Q99624 504 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 LINC00597Q9H2U6 94 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 NSUN3Q9H649 340 aaKnown RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 METTL17Q9H7H0 456 aaPredicted RBP12.54□□□□□ -0.4
CLK3-206ENST00000562078 EVA1AQ9H8M9 152 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SFXN1Q9H9B4 322 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 BEX1Q9HBH7 125 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 SCP2D1Q9UJQ7 156 aa12.54□□□□□ -0.4
CLK3-206ENST00000562078 TCF20Q9UGU0 1960 aaKnown RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 FAM170BA6NMN3 283 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 ADAMDEC1O15204 470 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 FFAR2O15552 330 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 ECDO95905 644 aaPredicted RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 TYRP14679 529 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 MLLT11Q13015 90 aaPredicted RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 SERTAD2Q14140 314 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 ST3GAL2Q16842 350 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 TTLL9Q3SXZ7 439 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 C3orf38Q5JPI3 329 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 WASH2PQ6VEQ5 465 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 USP30Q70CQ3 517 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 SLC16A13Q7RTY0 426 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 GOLGA7Q7Z5G4 137 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 WDR53Q7Z5U6 358 aaPredicted RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 ZBTB2Q8N680 514 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 NANOGP1Q8N7R0 232 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 VN1R2Q8NFZ6 395 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 LYSMD1Q96S90 227 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 DDOQ99489 341 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 ATF6BQ99941 703 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 DTX4Q9Y2E6 619 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 CASKO14936 926 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 SNAPINO95295 136 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 TGM6O95932 706 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 POU2F2P09086 479 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 S100A3P33764 101 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 FEN1P39748 380 aaKnown RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 ERVK-25P63136 954 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 GRIN2CQ14957 1233 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 NTRK2Q16620 822 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 HFEQ30201 348 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 ATP13A5Q4VNC0 1218 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 CRTC2Q53ET0 693 aaPredicted RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 LY6G5CQ5SRR4 150 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 LYPLAL1Q5VWZ2 237 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 VASNQ6EMK4 673 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 METAP1DQ6UB28 335 aaPredicted RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 KRT74Q7RTS7 529 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 TRMT11Q7Z4G4 463 aaKnown RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 SERPINA11Q86U17 422 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 OR52N1Q8NH53 320 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 WDR20Q8TBZ3 569 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 SPPL2AQ8TCT8 520 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 IRF7Q92985 503 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 MRPL38Q96DV4 380 aaKnown RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 C19orf43Q9BQ61 176 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 C11orf16Q9NQ32 467 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 NDUFAF4Q9P032 175 aa12.53□□□□□ -0.4
CLK3-206ENST00000562078 SPIN1Q9Y657 262 aaPredicted RBP12.53□□□□□ -0.4
CLK3-206ENST00000562078 WNT6Q9Y6F9 365 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms