RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NOXRED1Q6NXP6 359 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 NPSR1Q6W5P4 371 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 WDR53Q7Z5U6 358 aaPredicted RBP9.38□□□□□ -0.91
CLK3-205ENST00000561673 YRDCQ86U90 279 aaKnown RBP9.38□□□□□ -0.91
CLK3-205ENST00000561673 C10orf107Q8IVU9 208 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 PM20D2Q8IYS1 436 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 CLYBLQ8N0X4 340 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 C4orf33Q8N1A6 199 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 WDSUB1Q8N9V3 476 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 CCDC63Q8NA47 563 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 NAXEQ8NCW5 288 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 TNIP2Q8NFZ5 429 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 OR4N2Q8NGD1 307 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 CDC26Q8NHZ8 85 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 FAM76AQ8TAV0 307 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 RDH11Q8TC12 318 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 ABTB1Q969K4 478 aaPredicted RBP9.38□□□□□ -0.91
CLK3-205ENST00000561673 TMCO6Q96DC7 493 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 WDYHV1Q96HA8 205 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 BBS4Q96RK4 519 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 ADOQ96SZ5 270 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 OSBPL11Q9BXB4 747 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 UGT2B28Q9BY64 529 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 PRDM14Q9GZV8 571 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 FOLH1BQ9HBA9 442 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 SERHLQ9NQF3 203 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 TAS2R7Q9NYW3 318 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 MAPRE3Q9UPY8 281 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 CAMK2AQ9UQM7 478 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 CCL27Q9Y4X3 112 aa9.38□□□□□ -0.91
CLK3-205ENST00000561673 POLR3HQ9Y535 204 aaPredicted RBP9.38□□□□□ -0.91
CLK3-205ENST00000561673 PHF3Q92576 2039 aaKnown RBP9.38□□□□□ -0.91
CLK3-205ENST00000561673 TSPAN2O60636 221 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 CBR3O75828 277 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 RSL1D1O76021 490 aaKnown RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 JUNP05412 331 aaKnown RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 UROSP10746 265 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 POU3F2P20265 443 aaPredicted RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 BMP5P22003 454 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 TIMP3P35625 211 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 NCBP2P52298 156 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLK3-205ENST00000561673 SNTB1Q13884 538 aaKnown RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 KIAA0040Q15053 153 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 NSUN5P2Q63ZY6 315 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 CLEC6AQ6EIG7 209 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 LARP4Q71RC2 724 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLK3-205ENST00000561673 LACC1Q8IV20 430 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 SLC44A2Q8IWA5 706 aaPredicted RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 FAM9CQ8IZT9 166 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 OR2W6PQ8NHA6 318 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLK3-205ENST00000561673 SLC35A4Q96G79 324 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 STMN4Q9H169 189 aaPredicted RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 GLIPR2Q9H4G4 154 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 ANKZF1Q9H8Y5 726 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 MYNNQ9NPC7 610 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 RRAGDQ9NQL2 400 aaPredicted RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 TAS2R9Q9NYW1 312 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 SENP1Q9P0U3 644 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 KCNN3Q9UGI6 736 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 ITGB1BP2Q9UKP3 347 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 WBP11Q9Y2W2 641 aaKnown RBP9.37□□□□□ -0.91
CLK3-205ENST00000561673 PTGDR2Q9Y5Y4 395 aa9.37□□□□□ -0.91
CLK3-205ENST00000561673 VPS13CQ709C8 3753 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 TLDC2A0PJX2 215 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 UPK1AO00322 258 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 SLC28A1O00337 649 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 SYT5O00445 386 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 SEC22BO75396 215 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 ACTL6AO96019 429 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 IL2RAP01589 272 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 TACR1P25103 407 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 IL12BP29460 328 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 MC3RP41968 323 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 PNLIPRP2P54317 469 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 GAS1P54826 345 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 PSG6Q00889 435 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 EFR3AQ14156 821 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 SF3B4Q15427 424 aaKnown RBP eCLIP9.36□□□□□ -0.916e-6■□□□□ 11
CLK3-205ENST00000561673 CES4AQ5XG92 561 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 OR5M10Q6IEU7 315 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 POMZP3Q6PJE2 187 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 ARSKQ6UWY0 536 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 TMEM107Q6UX40 140 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 PLCZ1Q86YW0 608 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 RELL2Q8NC24 303 aaPredicted RBP9.36□□□□□ -0.91
CLK3-205ENST00000561673 OR14L1PQ8NHC6 308 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 RNF138Q8WVD3 245 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 EFHD2Q96C19 240 aaPredicted RBP9.36□□□□□ -0.91
CLK3-205ENST00000561673 ELP4Q96EB1 424 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 METTL2AQ96IZ6 378 aaKnown RBP9.36□□□□□ -0.91
CLK3-205ENST00000561673 EGLN2Q96KS0 407 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 AMDHD1Q96NU7 426 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 TRIB1Q96RU8 372 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 KCNK17Q96T54 332 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 ZNF559Q9BR84 538 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 GATA5Q9BWX5 397 aaPredicted RBP9.36□□□□□ -0.91
CLK3-205ENST00000561673 CALHM2Q9HA72 323 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 MIEF1Q9NQG6 463 aa9.36□□□□□ -0.91
CLK3-205ENST00000561673 TAS2R10Q9NYW0 307 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms