RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 COMMD3Q9UBI1 195 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 KIF26AQ9ULI4 1882 aaPredicted RBP12.1□□□□□ -0.47
LDLR-207ENST00000558013 FAM170BA6NMN3 283 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 PIP5K1CO60331 668 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 THY1P04216 161 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 CSF3P09919 207 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 HIST1H1TP22492 207 aaPredicted RBP12.1□□□□□ -0.47
LDLR-207ENST00000558013 KRT33BQ14525 404 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 KIAA1161Q6NSJ0 714 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 ZNF517Q6ZMY9 492 aaPredicted RBP12.1□□□□□ -0.47
LDLR-207ENST00000558013 LAPTM4BQ86VI4 370 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TRIM48Q8IWZ4 208 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 DTX3Q8N9I9 347 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 OR52E1Q8NGJ3 308 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 FGF13Q92913 245 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TP53INP1Q96A56 240 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TTYH2Q9BSA4 534 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TMED9Q9BVK6 235 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 SLC38A1Q9H2H9 487 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 WDR26Q9H7D7 661 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 PLSCR3Q9NRY6 295 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TAS2R7Q9NYW3 318 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 ZFR2Q9UPR6 939 aaKnown RBP12.1□□□□□ -0.47
LDLR-207ENST00000558013 ZC3H12DA2A288 527 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 FABP12A6NFH5 140 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 HYAL3O43820 417 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 CPEP16870 476 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 APEX1P27695 318 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 PEBP1P30086 187 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 MTNR1AP48039 350 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 VASPP50552 380 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 ZNF791Q3KP31 576 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 GLYR1Q49A26 553 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 C2orf27AQ580R0 203 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ABHD17CQ6PCB6 329 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ANKK1Q8NFD2 765 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 PRRC1Q96M27 445 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 OR7D2Q96RA2 312 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 C11orf54Q9H0W9 315 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 TBC1D17Q9HA65 648 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 IL23AQ9NPF7 189 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 TMEM74BQ9NUR3 256 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 APOBEC3BQ9UH17 382 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 TRAPPC4Q9Y296 219 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 SF3B6Q9Y3B4 125 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 CSNK1G3Q9Y6M4 447 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 A0A0B4J293 547 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 C2orf92A0A1B0GVN3 265 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 SLC35F4A4IF30 521 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 TMCC2O75069 709 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 EFCAB14O75071 495 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 MYL12AP19105 171 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ATP5A1P25705 553 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 NTSP30990 170 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 RAB28P51157 221 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 WNT4P56705 351 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ZNF730Q6ZMV8 503 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 SLC16A11Q8NCK7 471 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 OR4Q3Q8NH05 313 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 RASSF5Q8WWW0 418 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 BADQ92934 168 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 EFHD2Q96C19 240 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 RNF31Q96EP0 1072 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ST6GAL2Q96JF0 529 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ART5Q96L15 291 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ASB16Q96NS5 453 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 FYTTD1Q96QD9 318 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 YIPF2Q9BWQ6 316 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 MRPS30Q9NP92 439 aaKnown RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 MN1Q10571 1320 aaPredicted RBP12.09□□□□□ -0.47
LDLR-207ENST00000558013 MEIOCA2RUB1 952 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 CARNS1A5YM72 827 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 CLEC3AO75596 197 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 EML2O95834 649 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 KRT8P05787 483 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 TRIM23P36406 574 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 SMSP52788 366 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 SMIM11AP58511 58 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 P2RY14Q15391 338 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ENTPD8Q5MY95 495 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 TANGO2Q6ICL3 276 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 SLC27A4Q6P1M0 643 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 ATP6V1C2Q8NEY4 427 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 TMEM163Q8TC26 289 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 TMEM255BQ8WV15 326 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 GPSM3Q9Y4H4 160 aa12.09□□□□□ -0.47
LDLR-207ENST00000558013 GRXCR1A8MXD5 290 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 C1QTNF3-AMACRE9PGA6 284 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 RPN2P04844 631 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 KHKP50053 298 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 PDX1P52945 283 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 COX10Q12887 443 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.08□□□□□ -0.485e-6■□□□□ 10.9
LDLR-207ENST00000558013 CCNJQ5T5M9 372 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 FAM111BQ6SJ93 734 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 GET4Q7L5D6 327 aaPredicted RBP12.08□□□□□ -0.48
LDLR-207ENST00000558013 TMEFF1Q8IYR6 380 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 HDDC3Q8N4P3 179 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 CHAC2Q8WUX2 184 aa12.08□□□□□ -0.48
LDLR-207ENST00000558013 TMCO6Q96DC7 493 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms