RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	IGFBP5	P24593	272 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRKAR1B	P31321	381 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	HMGA2	P52926	109 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PDX1	P52945	283 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	CDH12	P55289	794 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	POU6F2	P78424	691 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ADARB1	P78563	741 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	FUT7	Q11130	342 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	CYP27C1	Q4G0S4	372 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF311	Q5JNZ3	666 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PLA2G2C	Q5R387	149 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	DCST2	Q5T1A1	773 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PHF19	Q5T6S3	580 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRAMEF17	Q5VTA0	474 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	LAIR1	Q6GTX8	287 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	FRRS1	Q6ZNA5	592 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF605	Q86T29	641 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	SLITRK4	Q8IW52	837 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PEX5L	Q8IYB4	626 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	SIMC1	Q8NDZ2	872 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF555	Q8NEP9	628 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	OR7G1	Q8NGA0	311 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	OR4C15	Q8NGM1	316 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	DOK4	Q8TEW6	326 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	GIPC3	Q8TF64	312 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	SDF2	Q99470	211 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF350	Q9GZX5	532 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	TOR3A	Q9H497	397 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	SMOC1	Q9H4F8	434 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	FOLH1B	Q9HBA9	442 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	SIDT1	Q9NXL6	827 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	KLHL28	Q9NXS3	571 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	KIF17	Q9P2E2	1029 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	KCND3	Q9UK17	655 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF232	Q9UNY5	417 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	HEMK1	Q9Y5R4	338 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	IGKV3D-11	A0A0A0MRZ8	115 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	NME6	O75414	186 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	JRK	O75564	520 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	GADD45G	O95257	159 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	THBS1	P07996	1170 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ANXA8	P13928	327 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ACP1	P24666	158 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	CSTF2	P33240	577 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	GABRA3	P34903	492 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	YAP1	P46937	504 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	LARS2	Q15031	903 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZIK1	Q3SY52	487 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	MINDY4	Q4G0A6	757 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	EIPR1	Q53HC9	387 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	COLEC12	Q5KU26	742 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	MFSD4B	Q5TF39	518 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	C1orf189	Q5VU69	101 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	KDM4D	Q6B0I6	523 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	TYW3	Q6IPR3	259 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	TCEAL6	Q6IPX3	200 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	FAHD1	Q6P587	224 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	TMEM154	Q6P9G4	183 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRR23C	Q6ZRP0	262 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	USP51	Q70EK9	711 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	OLIG3	Q7RTU3	272 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF619	Q8N2I2	560 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ATG16L2	Q8NAA4	619 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	RCBTB1	Q8NDN9	531 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	PIK3C3	Q8NEB9	887 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	OR52P1P	Q8NH57	321 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	VANGL1	Q8TAA9	524 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	PHF10	Q8WUB8	498 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	TCEAL3	Q969E4	200 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	PSD2	Q9BQI7	771 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	CNPPD1	Q9BV87	410 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	SAP130	Q9H0E3	1048 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ACER3	Q9NUN7	267 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	FTSJ1	Q9UET6	329 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRODH2	Q9UF12	536 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	TMEFF2	Q9UIK5	374 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ACAD8	Q9UKU7	415 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	SPTB	P11277	2137 aa		11.62	□□□□□ -0.55
SHMT2-233	ENST00000557529	ARRDC5	A6NEK1	342 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	AGAP5	A6NIR3	686 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	HYAL3	O43820	417 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	FCMR	O60667	390 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	SCRG1	O75711	98 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	DBI	P07108	87 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	ITGAM	P11215	1152 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	SSTR4	P31391	388 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	LIMS1	P48059	325 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	EMD	P50402	254 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	RPS6KA3	P51812	740 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	PGD	P52209	483 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	RHAG	Q02094	409 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	DUSP8	Q13202	625 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	IL18R1	Q13478	541 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	IL11RA	Q14626	422 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	LAPTM4A	Q15012	233 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	MICA	Q29983	383 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	EXOC3L2	Q2M3D2	409 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	LIN52	Q52LA3	116 aa		11.61	□□□□□ -0.55
SHMT2-233	ENST00000557529	AP1AR	Q63HQ0	302 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms