RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PARS2Q7L3T8 475 aaKnown RBP15.3■□□□□ 0.04
SHMT2-231ENST00000557433 RRM2BQ7LG56 351 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 ANKRD53Q8N9V6 530 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 SLC37A3Q8NCC5 494 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 VN1R2Q8NFZ6 395 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 OR56A1Q8NGH5 318 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 CXorf40AQ8TE69 158 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 NUS1Q96E22 293 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 OTUB1Q96FW1 271 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-231ENST00000557433 ARHGDIGQ99819 225 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 ABCG4Q9H172 646 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 EGLN3Q9H6Z9 239 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 WDR70Q9NW82 654 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 MARK1Q9P0L2 795 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 ING4Q9UNL4 249 aa15.3■□□□□ 0.04
SHMT2-231ENST00000557433 ISM1B1AKI9 464 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RTCAO00442 366 aaKnown RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RGS9O75916 674 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 EPPINO95925 133 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 DHFRP00374 187 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 CHRM5P08912 532 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 BUD31P41223 144 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 AP2S1P53680 142 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TRAM1Q15629 374 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TMEM215Q68D42 235 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 ZNF57Q68EA5 555 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 HBMQ6B0K9 141 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 LAMTOR1Q6IAA8 161 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 FAM180BQ6P0A1 224 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 COMTD1Q86VU5 262 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TTLQ8NG68 377 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 OR5M3Q8NGP4 307 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 OTUB2Q96DC9 234 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RNF32Q9H0A6 362 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 GLIPR2Q9H4G4 154 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RANBP3Q9H6Z4 567 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 SLC28A3Q9HAS3 691 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 HMX1Q9NP08 348 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 LHX9Q9NQ69 397 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 SLC35C2Q9NQQ7 365 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 CYSLTR2Q9NS75 346 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 HSPB11Q9Y547 144 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 MTCL1Q9Y4B5 1905 aaKnown RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 A0A0A6YYD5 115 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 SURF4O15260 269 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TGM5O43548 720 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TMPRSS11DO60235 418 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 CLEC3AO75596 197 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RFPL3O75679 317 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 PRNPP04156 253 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 CELP19835 753 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RBMS1P29558 406 aaKnown RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 AVPR1BP47901 424 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RFX3P48380 749 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 CAV3P56539 151 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TAS2R38P59533 333 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 GRIN2CQ14957 1233 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 DECR1Q16698 335 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TMEM35AQ53FP2 167 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 FAM46CQ5VWP2 391 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 RAET1GQ6H3X3 334 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TMEM107Q6UX40 140 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 ZNF547Q8IVP9 402 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 ELMOD2Q8IZ81 293 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 OR8D4Q8NGM9 314 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 AUTS2Q8WXX7 1259 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 SENP5Q96HI0 755 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 DCLRE1CQ96SD1 692 aaKnown RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TMED9Q9BVK6 235 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 SMG9Q9H0W8 520 aaKnown RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TBC1D17Q9HA65 648 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 EMC7Q9NPA0 242 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 KRCC1Q9NPI7 259 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-231ENST00000557433 IL20Q9NYY1 176 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 TAC3Q9UHF0 121 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 NCKAP1Q9Y2A7 1128 aa15.29■□□□□ 0.04
SHMT2-231ENST00000557433 A0A0X1KG70 313 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 SHOXO15266 292 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 NFATC1O95644 943 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 CHRM4P08173 479 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 ACP5P13686 325 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 CAPZA2P47755 286 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 OMPP47874 163 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 CEP78Q5JTW2 689 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 ZNF697Q5TEC3 545 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 OR4C11Q6IEV9 310 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 ZNF322Q6U7Q0 402 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-231ENST00000557433 LHFPL3Q86UP9 236 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 GID4Q8IVV7 300 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 LRRC17Q8N6Y2 441 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 OR5D16Q8NGK9 328 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 OR5H6Q8NGV6 325 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 WFIKKN2Q8TEU8 576 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 ACOT11Q8WXI4 607 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-231ENST00000557433 DIO2Q92813 273 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 RFT1Q96AA3 541 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 SCLYQ96I15 445 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 IL17FQ96PD4 163 aa15.28■□□□□ 0.04
SHMT2-231ENST00000557433 ZNF649Q9BS31 505 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms