RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 COQ5Q5HYK3 327 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CDC73Q6P1J9 531 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 TNFAIP8L2Q6P589 184 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-227ENST00000557269 TUBA3EQ6PEY2 450 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 IGFL2Q6UWQ7 119 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 ZNF227Q86WZ6 799 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 HORMAD2Q8N7B1 307 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 TRIML2Q8N7C3 387 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CDRT4Q8N9R6 151 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CATSPER1Q8NEC5 780 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 C17orf47Q8NEP4 570 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 FBXO27Q8NI29 283 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 MIPOL1Q8TD10 442 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 GPR151Q8TDV0 419 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 JADE3Q92613 823 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CDS1Q92903 461 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 RAB8BQ92930 207 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 SLC35G5Q96KT7 338 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 OR7D2Q96RA2 312 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CPPED1Q9BRF8 314 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-227ENST00000557269 OR51I1Q9H343 314 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 FBXO34Q9NWN3 711 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 FAF1Q9UNN5 650 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-227ENST00000557269 TP53TG5Q9Y2B4 290 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 ITPR1Q14643 2758 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 PRAMEF27A3QJZ7 478 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 CBX6O95503 412 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ALOX5P09917 674 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 FBXO45P0C2W1 286 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 OR12D1P0DN82 309 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 T-ENOLP0DO92 83 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ABCD3P28288 659 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 TRHRP34981 398 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-227ENST00000557269 SSR4P51571 173 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 KRT72Q14CN4 511 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 TRMT5Q32P41 509 aaKnown RBP11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ZNF791Q3KP31 576 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-227ENST00000557269 CCNJQ5T5M9 372 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 SPINK14Q6IE38 97 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ZCCHC12Q6PEW1 402 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 BHLHB9Q6PI77 547 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ANGPTL8Q6UXH0 198 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 OLIG3Q7RTU3 272 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 GALNT10Q86SR1 603 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 BCORP1Q8N888 145 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 TMBIM1Q969X1 311 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 LRRC58Q96CX6 371 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 CMTM5Q96DZ9 223 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 OMA1Q96E52 524 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 HSPBAP1Q96EW2 488 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 SIGLEC12Q96PQ1 595 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 CGREF1Q99674 301 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ARHGAP9Q9BRR9 750 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 PIGUQ9H490 435 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 ZNF71Q9NQZ8 489 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-227ENST00000557269 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-227ENST00000557269 TAGLN3Q9UI15 199 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 TEKT2Q9UIF3 430 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 NPFFR2Q9Y5X5 522 aa11.82□□□□□ -0.52
SHMT2-227ENST00000557269 A8MVJ9 347 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 HMGN4O00479 90 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ACOX3O15254 700 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 KRT75O95678 551 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 NUDT7P0C024 238 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ETFAP13804 333 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 PIGAP37287 484 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 HLCSP50747 726 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 FBXW4P57775 412 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 MTPNP58546 118 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 MRPS22P82650 360 aaKnown RBP11.81□□□□□ -0.52
SHMT2-227ENST00000557269 FUT5Q11128 374 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 LY6DQ14210 128 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 RGNQ15493 299 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ZNHIT3Q15649 155 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-227ENST00000557269 MAPK11Q15759 364 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 RABL3Q5HYI8 236 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 NANOGP8Q6NSW7 305 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 FIGNL1Q6PIW4 674 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 IGFL3Q6UXB1 125 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 IL20RBQ6UXL0 311 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 TRPM8Q7Z2W7 1104 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 MDGA2Q7Z553 956 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ZAR1Q86SH2 424 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 TAGAPQ8N103 731 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 TMEM156Q8N614 296 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 SLC15A4Q8N697 577 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 RBMXL3Q8N7X1 1067 aaKnown RBP11.81□□□□□ -0.52
SHMT2-227ENST00000557269 OR52N2Q8NGI0 321 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 OR5M3Q8NGP4 307 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 DNAJB8Q8NHS0 232 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 FAM110BQ8TC76 370 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 SLC22A8Q8TCC7 542 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ADAMTS15Q8TE58 950 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ASB15Q8WXK1 588 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 HAS2Q92819 552 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 EFHD2Q96C19 240 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-227ENST00000557269 RMND5BQ96G75 393 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-227ENST00000557269 ANKRD27Q96NW4 1050 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 STACQ99469 402 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms