RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 JAM3Q9BX67 310 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 TLNRD1Q9H1K6 362 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 ACTL8Q9H568 366 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SMCO4Q9NRQ5 59 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 KLHL8Q9P2G9 620 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 POFUT2Q9Y2G5 429 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 MYO18AQ92614 2054 aaKnown RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 GREB1LQ9C091 1923 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 CHD5Q8TDI0 1954 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 LRRC14BA6NHZ5 514 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PRR23D1E9PI22 279 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 HAS3O00219 553 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 MID1O15344 667 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PRKYO43930 277 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 GRAP2O75791 330 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 THP07101 528 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PRR23D2P0DMB1 279 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 C6P13671 934 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 LCP2Q13094 533 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 OR52W1Q6IF63 320 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 OR6B2Q6IFH4 312 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 RABEPKQ7Z6M1 372 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SYNPOQ8N3V7 929 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PRSS35Q8N3Z0 413 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 CCNYQ8ND76 341 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 FAM71CQ8NEG0 241 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 CCDC54Q8NEL0 328 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 CD99L2Q8TCZ2 262 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 HIST1H2BAQ96A08 127 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 R3HDM4Q96D70 268 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 BSCL2Q96G97 398 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 FEVQ99581 238 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PIGQQ9BRB3 760 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 MESP1Q9BRJ9 268 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SLC25A19Q9HC21 320 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 KLHL9Q9P2J3 617 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 GOLT1BQ9Y3E0 138 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF646O15015 1829 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 A0A1B0GTL3 188 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 BLOC1S5-TXNDC5H3BN57 136 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 GFYI3L273 518 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 M0QZ92 97 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 MFSD11O43934 449 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 FADS1O60427 444 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 PTBP3O95758 552 aaKnown RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 UBBP0CG47 229 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 UBCP0CG48 685 aaKnown RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 AKAP5P24588 427 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 GPR3P46089 330 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 ANXA11P50995 505 aaKnown RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 HCCSP53701 268 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CD81P60033 236 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CDC42P60953 191 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 RPS27AP62979 156 aaKnown RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 UBA52P62987 128 aaKnown RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 TDGQ13569 410 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 ARSIQ5FYB1 569 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 QSOX2Q6ZRP7 698 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 KDELC2Q7Z4H8 507 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 LRRC18Q8N456 261 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 HDDC3Q8N4P3 179 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 ST7LQ8TDW4 575 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 NUDT8Q8WV74 236 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 VOPP1Q96AW1 172 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 SLC25A36Q96CQ1 311 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 C1GALT1C1Q96EU7 318 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF558Q96NG5 402 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 FICDQ9BVA6 458 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 RERGLQ9H628 205 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 BEX1Q9HBH7 125 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 SIRT7Q9NRC8 400 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 FAM86C1Q9NVL1 165 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 TMEM210A6NLX4 147 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 H7C1Q1 480 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 PRRG1O14668 218 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 OR10H2O60403 315 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CD2P06729 351 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CLUP10909 449 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 MPGP29372 298 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 AKT1P31749 480 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 NOS2P35228 1153 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 RFX3P48380 749 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CXADRP78310 365 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 PRR5P85299 388 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 TCP10Q12799 353 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 SLC39A12Q504Y0 691 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 SEZ6Q53EL9 994 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CRTC2Q53ET0 693 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 OTUD1Q5VV17 481 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-226ENST00000556825 LIN54Q6MZP7 749 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 DEFB132Q7Z7B7 95 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CDAN1Q8IWY9 1227 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CFAP206Q8IYR0 622 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 RAB24Q969Q5 203 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 OR4K3Q96R72 315 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 PINK1Q9BXM7 581 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 NFKBIZQ9BYH8 718 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 MAGEB5Q9BZ81 275 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 LHX9Q9NQ69 397 aa13.04□□□□□ -0.32
SHMT2-226ENST00000556825 CYSLTR2Q9NS75 346 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms