RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MTERF3Q96E29 417 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 DTNBP1Q96EV8 351 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 NODALQ96S42 347 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 SPOCK3Q9BQ16 436 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 TTYH2Q9BSA4 534 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 MECRQ9BV79 373 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 GLIPR2Q9H4G4 154 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 METTL7AQ9H8H3 244 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 NTMQ9P121 344 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 ACAD8Q9UKU7 415 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 PTGDR2Q9Y5Y4 395 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 ABCA12Q86UK0 2595 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 NCKAP5O14513 1909 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 DCHS2Q6V1P9 2916 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 UPK1AO00322 258 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ICOSLGO75144 302 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 SPAG7O75391 227 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 SNUPNO95149 360 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 LRATO95237 230 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 JUNP05412 331 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 DDX5P17844 614 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 MASP1P48740 699 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 CORO7P57737 925 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 PSG6Q00889 435 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 CRYZQ08257 329 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 KRT71Q3SY84 523 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 CYP27C1Q4G0S4 372 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 RFTN2Q52LD8 501 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 C1orf185Q5T7R7 199 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 RTL6Q6ICC9 239 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 LIX1Q8N485 282 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 RPRMLQ8N4K4 120 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 TMBIM1Q969X1 311 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ELP4Q96EB1 424 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 EGLN2Q96KS0 407 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 PPP3R2Q96LZ3 170 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 JSRP1Q96MG2 331 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 GNRHR2Q96P88 292 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ZIM3Q96PE6 472 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 PRDM14Q9GZV8 571 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ENKD1Q9H0I2 346 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 SLC6A15Q9H2J7 730 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 REEP4Q9H6H4 257 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ANKRA2Q9H9E1 313 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ACSS1Q9NUB1 689 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 RNF6Q9Y252 685 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 ACTL7BQ9Y614 415 aa14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 V9GYY5 206 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-209ENST00000554872 NINQ8N4C6 2090 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 AHRRA9YTQ3 701 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 TM9SF1O15321 606 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 BIRC5O15392 142 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 GLI4P10075 376 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 CREB1P16220 341 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 IGFBP2P18065 325 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 ARRB2P32121 409 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 MC3RP41968 323 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 NUP107P57740 925 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 RPL38P63173 70 aaKnown RBP14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 TFF3Q07654 80 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 SH2D4BQ5SQS7 431 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 RIPPLY2Q5TAB7 128 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 VASNQ6EMK4 673 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 LRIG3Q6UXM1 1119 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 PM20D2Q8IYS1 436 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 ULK2Q8IYT8 1036 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 OR5M9Q8NGP3 310 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 OR1J4Q8NGS1 313 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 CDC26Q8NHZ8 85 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 LMF2Q9BU23 707 aaKnown RBP14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 EXO5Q9H790 373 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 DDX18Q9NVP1 670 aaKnown RBP14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 ABCG2Q9UNQ0 655 aa14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 MRPS18CQ9Y3D5 142 aaKnown RBP14.65□□□□□ -0.06
CCDC88C-209ENST00000554872 TMEM114B3SHH9 223 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 TMEM233B4DJY2 109 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 PIP5K1BO14986 540 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 RGS16O15492 202 aaPredicted RBP14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 PDPK1O15530 556 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 CBR3O75828 277 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 LINC00032P0C843 101 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 DHRS4L1P0CG22 281 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 COX6B1P14854 86 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 MAPK1P28482 360 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 KRT20P35900 424 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 MAP3K8P41279 467 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 PMPCAQ10713 525 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 MLC1Q15049 377 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 SF3B4Q15427 424 aaKnown RBP eCLIP14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 ZNF585AQ6P3V2 769 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 TMEM107Q6UX40 140 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 ANGPTL8Q6UXH0 198 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 R3HCC1LQ7Z5L2 792 aaKnown RBP14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 KIRREL3Q8IZU9 778 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 ZFP28Q8NHY6 868 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 PPCDCQ96CD2 204 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 ZBED6CLQ96FA7 236 aaPredicted RBP14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 PGM2Q96G03 612 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 TIMP4Q99727 224 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms