RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C10orf90Q96M02 699 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 OR5M11Q96RB7 305 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 IGFLR1Q9H665 355 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 EVA1BQ9NVM1 165 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SLCO1C1Q9NYB5 712 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 KCMF1Q9P0J7 381 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ZNF225Q9UK10 706 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ABCG2Q9UNQ0 655 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 COL5A1P20908 1838 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 CEP192Q8TEP8 1941 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 HEPACAM2A8MVW5 462 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 NUDT19A8MXV4 375 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 MMP20O60882 483 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 NIPSNAP2O75323 286 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 AQP8O94778 261 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 OTCP00480 354 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 PLGP00747 810 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 PAX6P26367 422 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ACSL1P33121 698 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 KDELR2P33947 212 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 OPRD1P41143 372 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 TNFRSF4P43489 277 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 GSTM5P46439 218 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 LIMS1P48059 325 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 HOXC5Q00444 222 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 OLIG2Q13516 323 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 HABP2Q14520 560 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 DMC1Q14565 340 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 LGALSLQ3ZCW2 172 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 CYP27C1Q4G0S4 372 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 KIAA1211LQ6NV74 962 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 UQCC3Q6UW78 93 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 FAM131BQ86XD5 332 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 MIB1Q86YT6 1006 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ADGRG2Q8IZP9 1017 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 GJD3Q8N144 294 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SPATA6LQ8N4H0 392 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SPICQ8N5J4 248 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 MS4A15Q8N5U1 240 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ZNF655Q8N720 491 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 NPWQ8N729 165 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 DCBLD1Q8N8Z6 715 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 B3GNT7Q8NFL0 401 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 MTERF3Q96E29 417 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ALG14Q96F25 216 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 TCEAL7Q9BRU2 100 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 MED10Q9BTT4 135 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 DPY30Q9C005 99 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 TCF7L1Q9HCS4 588 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SERHLQ9NQF3 203 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 KLHL9Q9P2J3 617 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 RNF112Q9ULX5 631 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 GSTK1Q9Y2Q3 226 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 RPL36Q9Y3U8 105 aaKnown RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 PTGDR2Q9Y5Y4 395 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 PCM1Q15154 2024 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 TRDV1A0A1B0GX56 115 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 TMEM129A0AVI4 362 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 M0R233 179 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 ERAL1O75616 437 aaKnown RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 MPC2O95563 127 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 JCHAINP01591 159 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 TPH1P17752 444 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 RBMS1P29558 406 aaKnown RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 RFX3P48380 749 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 PCP4P48539 62 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 FOXK2Q01167 660 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 BTN1A1Q13410 526 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 ETFDHQ16134 617 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 FAM214AQ32MH5 1076 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 OGFOD3Q6PK18 319 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 SLC30A8Q8IWU4 369 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 PGBD5Q8N414 524 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 FAM71CQ8NEG0 241 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 FAM46DQ8NEK8 389 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 OR8K3Q8NH51 312 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.96□□□□□ -1.61
USP28-213ENST00000544967 NANOS1Q8WY41 292 aaKnown RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 WBP2Q969T9 261 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 FUBP1Q96AE4 644 aaKnown RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 KCNA7Q96RP8 456 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 C12orf57Q99622 126 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 H2AFJQ9BTM1 129 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 CNPPD1Q9BV87 410 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 DPAGT1Q9H3H5 408 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 RNF167Q9H6Y7 350 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 TXNL4BQ9NX01 149 aaKnown RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 GPR83Q9NYM4 423 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 FTSJ1Q9UET6 329 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 UTS2RQ9UKP6 389 aa4.96□□□□□ -1.61
USP28-213ENST00000544967 RPH3AQ9Y2J0 694 aaPredicted RBP4.96□□□□□ -1.61
USP28-213ENST00000544967 UNC80Q8N2C7 3258 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 PIPSLA2A3N6 862 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 ACOD1A6NK06 481 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 HMSDA8MTL9 139 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 PRR33A8MZF0 331 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SUPT3HB4E1H0 165 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 CBX4O00257 560 aa4.96□□□□□ -1.62
USP28-213ENST00000544967 SLC25A17O43808 307 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms