RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	C16orf62	Q7Z3J2	963 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	MSRB3	Q8IXL7	192 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	LGI4	Q8N135	537 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	BEST3	Q8N1M1	668 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	HORMAD2	Q8N7B1	307 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	C17orf47	Q8NEP4	570 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR4N2	Q8NGD1	307 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR52N2	Q8NGI0	321 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR5D16	Q8NGK9	328 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR5M3	Q8NGP4	307 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	TM9SF4	Q92544	642 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PIK3R3	Q92569	461 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	CDS1	Q92903	461 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	RAB8B	Q92930	207 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	TMBIM1	Q969X1	311 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	RMND5B	Q96G75	393 aa	Predicted RBP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC35A4	Q96G79	324 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ANKRD27	Q96NW4	1050 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	BTBD9	Q96Q07	612 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR7D2	Q96RA2	312 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	LMF1	Q96S06	567 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	RASL10B	Q96S79	203 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	STAC	Q99469	402 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	HOPX	Q9BPY8	73 aa	Predicted RBP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ECSIT	Q9BQ95	431 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	UTP23	Q9BRU9	249 aa	Known RBP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC39A3	Q9BRY0	314 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PIGU	Q9H490	435 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZBTB20	Q9HC78	741 aa	Predicted RBP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	HPF1	Q9NWY4	346 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ANKRD10	Q9NXR5	420 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PLA2G3	Q9NZ20	509 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	MRTO4	Q9UKD2	239 aa	Known RBP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	CBLC	Q9ULV8	474 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	CORO2B	Q9UQ03	480 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	L3MBTL1	Q9Y468	752 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	NPFFR2	Q9Y5X5	522 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	FRY	Q5TBA9	3013 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	SCN2A	Q99250	2005 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ACACB	O00763	2458 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	EBAG9	O00559	213 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	HS6ST1	O60243	411 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CEACAM4	O75871	244 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	NKX2-2	O95096	273 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	WDPCP	O95876	746 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	FAM87A	P0C7U9	286 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CT45A8	P0DMV1	189 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CT45A9	P0DMV2	189 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	NR2F1	P10589	423 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ETFA	P13804	333 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ATP6V1C1	P21283	382 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CALB2	P22676	271 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	IL12B	P29460	328 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	SOX11	P35716	441 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	SOX3	P41225	446 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CYB561	P49447	251 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	PSMD4	P55036	377 aa	Known RBP	9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	DSTN	P60981	165 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	PSME3	P61289	254 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	PSPH	P78330	225 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	POU6F2	P78424	691 aa	Predicted RBP	9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	TXNL4A	P83876	142 aa	Known RBP	9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	HPCA	P84074	193 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	RHD	Q02161	417 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	RGN	Q15493	299 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CYP51A1	Q16850	503 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CYP27C1	Q4G0S4	372 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	CT45A2	Q5DJT8	189 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	GCNT6	Q5T4J0	391 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	NANOGP8	Q6NSW7	305 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	FIGNL1	Q6PIW4	674 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	C16orf89	Q6UX73	402 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	GALNT10	Q86SR1	603 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC34A3	Q8N130	599 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZADH2	Q8N4Q0	377 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC15A4	Q8N697	577 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	BCORP1	Q8N888	145 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZNF441	Q8N8Z8	693 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	FAM13C	Q8NE31	585 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	EFHD2	Q96C19	240 aa	Predicted RBP	9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	OMA1	Q96E52	524 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ABHD17A	Q96GS6	310 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	BTBD2	Q9BX70	525 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	TRIM8	Q9BZR9	551 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	SERHL2	Q9H4I8	314 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	PIF1	Q9H611	641 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	NANOG	Q9H9S0	305 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	DUSP22	Q9NRW4	184 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ADA2	Q9NZK5	511 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZNF451	Q9Y4E5	1061 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	KCNE3	Q9Y6H6	103 aa		9.38	□□□□□ -0.91
CPSF7-221	ENST00000543545	TRBV5-3	A0A0A0MS03	114 aa		9.37	□□□□□ -0.91
CPSF7-221	ENST00000543545	C15orf38-AP3S2	A0A0A6YYH1	394 aa		9.37	□□□□□ -0.91
CPSF7-221	ENST00000543545	C5orf58	C9J3I9	102 aa		9.37	□□□□□ -0.91
CPSF7-221	ENST00000543545	TP53I11	O14683	189 aa		9.37	□□□□□ -0.91
CPSF7-221	ENST00000543545	T	O15178	435 aa		9.37	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC28A2	O43868	658 aa		9.37	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZNF354A	O60765	605 aa	Predicted RBP	9.37	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms