RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SLC6A18Q96N87 628 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 BCL7BQ9BQE9 202 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 ZBTB20Q9HC78 741 aaPredicted RBP15.27■□□□□ 0.04
COL4A1-204ENST00000543140 FAM60AQ9NP50 221 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 ADAP2Q9NPF8 381 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 TBC1D23Q9NUY8 699 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 ENTPD2Q9Y5L3 495 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 PMF1-BGLAPU3KQ54 211 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 SDK1Q7Z5N4 2213 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 KIR2DS5A0A0G2JLQ3 304 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 A0A0G2JNG1 304 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 SH3D21A4FU49 640 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 C10orf142B7Z368 130 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 KIR2DS3K7RE56 304 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 AIREO43918 545 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 PTNP21246 168 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 CLK1P49759 484 aaKnown RBP15.27■□□□□ 0.03
COL4A1-204ENST00000543140 KIR2DS5Q14953 304 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 MED22Q15528 200 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 PRAMEF8Q5VWM4 474 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 PRAMEF7Q5VXH5 474 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 FRRS1Q6ZNA5 592 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 USP53Q70EK8 1073 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 OR2L13Q8N349 312 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 ZFPM2Q8WW38 1151 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 OR5M11Q96RB7 305 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 CCDC3Q9BQI4 270 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 SEMA4GQ9NTN9 838 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 WSB2Q9NYS7 404 aaPredicted RBP15.27■□□□□ 0.03
COL4A1-204ENST00000543140 CALML5Q9NZT1 146 aa15.27■□□□□ 0.03
COL4A1-204ENST00000543140 A0A087WUU8 490 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 EFCAB10A6NFE3 127 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 DUXAA6NLW8 204 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 SGK494L7N484 410 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 GLULP15104 373 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ST6GAL1P15907 406 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 GRK5P34947 590 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 MLLT1Q03111 559 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 SOWAHCQ53LP3 525 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ARMCX4Q5H9R4 360 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 C12orf73Q69YU5 71 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CDC73Q6P1J9 531 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ADCK1Q86TW2 530 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 FNDC8Q8TC99 324 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 DYNC2LI1Q8TCX1 351 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ZDHHC1Q8WTX9 485 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ZHX1-C8orf76Q96EF9 292 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 KLHDC7BQ96G42 594 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 TTYH1Q9H313 450 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CLCA2Q9UQC9 943 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 LOC100506127A0A0U1RQW1 187 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CENPVL1A0A0U1RR11 272 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ZSCAN9O15535 394 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 TLX2O43763 284 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CNOT3O75175 753 aaKnown RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CYP7B1O75881 506 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 SLITRK5O94991 958 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CCNYL3P0C7X3 344 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 ACP2P11117 423 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 NT5EP21589 574 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 IRF3Q14653 427 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 GINS1Q14691 196 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 GPR68Q15743 365 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 PLAG1Q6DJT9 500 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 HEPHL1Q6MZM0 1159 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 BTLAQ7Z6A9 289 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 SAMD14Q8IZD0 417 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 WDR36Q8NI36 951 aaKnown RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 SH3YL1Q96HL8 342 aaPredicted RBP15.26■□□□□ 0.03
COL4A1-204ENST00000543140 EGLN3Q9H6Z9 239 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 CNIH4Q9P003 139 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 WDR45Q9Y484 360 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 LAMA1P25391 3075 aa15.26■□□□□ 0.03
COL4A1-204ENST00000543140 OR5K3A6NET4 321 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 PRKYO43930 277 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 IGLV3-19P01714 112 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 CHRNB1P11230 501 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 RGS8P57771 180 aaPredicted RBP15.25■□□□□ 0.03
COL4A1-204ENST00000543140 SNRPGP62308 76 aaKnown RBP15.25■□□□□ 0.03
COL4A1-204ENST00000543140 MAP4K2Q12851 820 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 SRSF5Q13243 272 aaKnown RBP15.25■□□□□ 0.03
COL4A1-204ENST00000543140 DOC2BQ14184 412 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 NR1D2Q14995 579 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 EXOSC7Q15024 291 aaKnown RBP15.25■□□□□ 0.03
COL4A1-204ENST00000543140 CCDC85BQ15834 202 aaPredicted RBP15.25■□□□□ 0.03
COL4A1-204ENST00000543140 DGUOKQ16854 277 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 PUS10Q3MIT2 529 aaKnown RBP15.25■□□□□ 0.03
COL4A1-204ENST00000543140 ACSM5Q6NUN0 579 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 C1orf94Q6P1W5 598 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 RNF44Q7L0R7 432 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 PRICKLE2Q7Z3G6 844 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 TMCO5AQ8N6Q1 288 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 ARHGDIGQ99819 225 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 PLA2G12AQ9BZM1 189 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 RNF167Q9H6Y7 350 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 IL21RQ9HBE5 538 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 SLC25A19Q9HC21 320 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 CAPN10Q9HC96 672 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 LYRM4Q9HD34 91 aa15.25■□□□□ 0.03
COL4A1-204ENST00000543140 NTMQ9P121 344 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms