RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 KLRF1Q9NZS2 232 aa4.27□□□□□ -1.73
LIMS1-214ENST00000542845 ARMCX1Q9P291 453 aa4.27□□□□□ -1.73
LIMS1-214ENST00000542845 TMEFF2Q9UIK5 374 aaPredicted RBP4.27□□□□□ -1.73
LIMS1-214ENST00000542845 DKKL1Q9UK85 242 aa4.27□□□□□ -1.73
LIMS1-214ENST00000542845 PTBP2Q9UKA9 531 aaKnown RBP4.27□□□□□ -1.73
LIMS1-214ENST00000542845 RIMKLBQ9ULI2 386 aa4.27□□□□□ -1.73
LIMS1-214ENST00000542845 DLGAP4Q9Y2H0 992 aa4.27□□□□□ -1.73
LIMS1-214ENST00000542845 TENM1Q9UKZ4 2725 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 SHISA3A0PJX4 238 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 SYNDIG1LA6NDD5 238 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 ANKDD1BA6NHY2 528 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 TRIM77I1YAP6 450 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 EIF3FO00303 357 aaPredicted RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CLGNO14967 610 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 GSTA4O15217 222 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 FGF17O60258 216 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 H2AFYO75367 372 aaKnown RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 ULK1O75385 1050 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PRKD3O94806 890 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 NTN1O95631 604 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 IFNB1P01574 187 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 ENO3P13929 434 aaPredicted RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF708P17019 499 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CPN2P22792 545 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 ZFP36P26651 326 aaKnown RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CETN2P41208 172 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 STT3AP46977 705 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PCYT1AP49585 367 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 COMPP49747 757 aaPredicted RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 TMED10P49755 219 aaKnown RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CDH11P55287 796 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CTBP2P56545 445 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CLDN18P56856 261 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 NRG3P56975 720 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PCBP3P57721 371 aaKnown RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 RPS13P62277 151 aaKnown RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 LGALS3BPQ08380 585 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 FUT7Q11130 342 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CTBP1Q13363 440 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 NR1I3Q14994 352 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PON3Q15166 354 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 NNATQ16517 81 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 STX1AQ16623 288 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 TMEM177Q53S58 311 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 AWAT1Q58HT5 328 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 DUPD1Q68J44 220 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 TRIM40Q6P9F5 258 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 BEND4Q6ZU67 534 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 FAM214BQ7L5A3 538 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PRUNE1Q86TP1 453 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CCDC25Q86WR0 208 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 KLHDC8BQ8IXV7 354 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 MPP5Q8N3R9 675 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CEP112Q8N8E3 955 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 OR5M1Q8NGP8 315 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 FNDC9Q8TBE3 224 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF418Q8TF45 676 aaPredicted RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 KCTD4Q8WVF5 259 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PMM1Q92871 262 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 MS4A6EQ96DS6 147 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 OR4K3Q96R72 315 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 F2RL3Q96RI0 385 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 SERINC2Q96SA4 455 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 SOX7Q9BT81 388 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 MCMBPQ9BTE3 642 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 REXO4Q9GZR2 422 aaKnown RBP4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PARVBQ9HBI1 364 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 NGBQ9NPG2 151 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 FANCFQ9NPI8 374 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 GPATCH2Q9NW75 528 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 WWOXQ9NZC7 414 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 EHD3Q9NZN3 535 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 FETUBQ9UGM5 382 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 POU2F3Q9UKI9 436 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 CAPN11Q9UMQ6 739 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 NENFQ9UMX5 172 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 DAPP1Q9UN19 280 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 DHRS7Q9Y394 339 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 MAD1L1Q9Y6D9 718 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 COMMD10Q9Y6G5 202 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 IKBKGQ9Y6K9 419 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 SPACA6W5XKT8 324 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 PRR14LQ5THK1 2151 aa4.26□□□□□ -1.73
LIMS1-214ENST00000542845 EXPH5Q8NEV8 1989 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 LRP5LA4QPB2 252 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 LRIT2A6NDA9 550 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 GOLGA6L9A6NEM1 432 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 DPRXA6NFQ7 191 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 GLOD5A6NK44 160 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 WASHC1A8K0Z3 465 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ERI2A8K979 691 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SMTNL1A8MU46 457 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 BTNL10A8MVZ5 291 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FAM157AC9JC47 383 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 H3BML4 177 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SAP18O00422 153 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 RTCAO00442 366 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PJA2O43164 708 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 HCRTR2O43614 444 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TJP3O95049 919 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms