RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	FAM72B	Q86X60	149 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	CDK20	Q8IZL9	346 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	UBE2J2	Q8N2K1	259 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	ANKFN1	Q8N957	763 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	NECAB1	Q8N987	351 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	DRAXIN	Q8NBI3	349 aa	Predicted RBP	4.12	□□□□□ -1.75
ATM-223	ENST00000533979	RDM1	Q8NG50	284 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	RAET1E	Q8TD07	263 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	PEX13	Q92968	403 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	DEFB118	Q96PH6	123 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	NPAS2	Q99743	824 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	AGPAT1	Q99943	283 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	LRRC1	Q9BTT6	524 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	TMEM43	Q9BTV4	400 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	LRRCC1	Q9C099	1032 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	FAM192A	Q9GZU8	254 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	SLC26A1	Q9H2B4	701 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	A4GALT	Q9NPC4	353 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	OLFML3	Q9NRN5	406 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	QPCTL	Q9NXS2	382 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	ZDHHC2	Q9UIJ5	367 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	GRID1	Q9ULK0	1009 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	GAB2	Q9UQC2	676 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	TRAF3IP3	Q9Y228	551 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	OR2W1	Q9Y3N9	320 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	KIF1A	Q12756	1690 aa		4.12	□□□□□ -1.75
ATM-223	ENST00000533979	TRPM3	Q9HCF6	1732 aa	Predicted RBP	4.12	□□□□□ -1.75
ATM-223	ENST00000533979	TRPM1	Q7Z4N2	1603 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CIC	Q96RK0	1608 aa	Predicted RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ARHGEF35	A5YM69	484 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CYSRT1	A8MQ03	144 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ZNF732	B4DXR9	585 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	NPIPA2	E9PIF3	369 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ZNHIT1	O43257	154 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	PAK4	O96013	591 aa	Predicted RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	STAG3L3	P0CL85	134 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SLC2A3	P11169	496 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CYP11B1	P15538	503 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	UQCRC2	P22695	453 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	MARK3	P27448	753 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	RBMS1	P29558	406 aa	Known RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	GNL1	P36915	607 aa	Predicted RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CCT6A	P40227	531 aa	Known RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	B3GALT5-AS1	P59052	145 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	HSPA14	Q0VDF9	509 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CEACAM7	Q14002	265 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	MEF2D	Q14814	521 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	DUOXA1	Q1HG43	343 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	KIF26B	Q2KJY2	2108 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	LRIT3	Q3SXY7	679 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	GPR33	Q49SQ1	333 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	PDLIM3	Q53GG5	364 aa	Predicted RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	AADACL4	Q5VUY2	407 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CDC42EP5	Q6NZY7	148 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CORO6	Q6QEF8	472 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SYT10	Q6XYQ8	523 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CENPU	Q71F23	418 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SLC26A9	Q7LBE3	791 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	BIVM	Q86UB2	503 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	LRRC49	Q8IUZ0	686 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ODF3L1	Q8IXM7	274 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	KLHDC8B	Q8IXV7	354 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ZC3H3	Q8IXZ2	948 aa	Known RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ZNF683	Q8IZ20	524 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	RCOR2	Q8IZ40	523 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CIART	Q8N365	385 aa	Predicted RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ZNF321P	Q8N8H1	164 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SLC2A14	Q8TDB8	520 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	GRHL3	Q8TE85	626 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	BPIFA2	Q96DR5	249 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	HPDL	Q96IR7	371 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	VSTM2L	Q96N03	204 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	NEURL2	Q9BR09	285 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	URM1	Q9BTM9	101 aa	Known RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	NDUFAF3	Q9BU61	184 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SLC7A5P2	Q9GIP4	190 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	FAM124B	Q9H5Z6	455 aa	Predicted RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	MEAF6	Q9HAF1	191 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	CHST11	Q9NPF2	352 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	MED4	Q9NPJ6	270 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	OR6C2	Q9NZP2	312 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ERVK-18	Q9QC07	812 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ONECUT1	Q9UBC0	465 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	EPHA6	Q9UF33	1036 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	MIOX	Q9UGB7	285 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	KIAA1257	Q9ULG3	409 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	DIMT1	Q9UNQ2	313 aa	Known RBP	4.11	□□□□□ -1.75
ATM-223	ENST00000533979	UMODL1	Q5DID0	1318 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	FANCI	Q9NVI1	1328 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SBNO1	A3KN83	1393 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	SSH2	Q76I76	1423 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ATP7B	P35670	1465 aa		4.11	□□□□□ -1.75
ATM-223	ENST00000533979	ALS2	Q96Q42	1657 aa		4.1	□□□□□ -1.75
ATM-223	ENST00000533979	CRYBG1	Q9Y4K1	1723 aa		4.1	□□□□□ -1.75
ATM-223	ENST00000533979	COL14A1	Q05707	1796 aa	Known RBP	4.1	□□□□□ -1.75
ATM-223	ENST00000533979		A0A1W2PN81	502 aa		4.1	□□□□□ -1.75
ATM-223	ENST00000533979		H0YHG0	523 aa		4.1	□□□□□ -1.75
ATM-223	ENST00000533979	WRB	O00258	174 aa		4.1	□□□□□ -1.75
ATM-223	ENST00000533979	ARPC3	O15145	178 aa		4.1	□□□□□ -1.75
ATM-223	ENST00000533979	SPOP	O43791	374 aa		4.1	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms