RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GIMAP5Q96F15 307 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 SLC35A4Q96G79 324 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 TMEM41AQ96HV5 264 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 SORT1Q99523 831 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 CCT7Q99832 543 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 TREX2Q9BQ50 279 aaPredicted RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 KLHDC3Q9BQ90 382 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 UCK2Q9BZX2 261 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 RRAGDQ9NQL2 400 aaPredicted RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 SIRT3Q9NTG7 399 aaPredicted RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 NTMQ9P121 344 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 SUCOQ9UBS9 1254 aaKnown RBP9.73□□□□□ -0.85
CD44-227ENST00000528086 RNF6Q9Y252 685 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 C15orf41Q9Y2V0 281 aa9.73□□□□□ -0.85
CD44-227ENST00000528086 A0A087WV62 115 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 TRGV5A0A0B4J1U4 118 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 A0A0G2JNJ9 132 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 GXYLT2A0PJZ3 443 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 CCDC151A5D8V7 595 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 OR14I1A6ND48 311 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 OR6C70A6NIJ9 312 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ACOT7O00154 380 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 GNB5O14775 395 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 SNPHO15079 494 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ACOX3O15254 700 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 AKAP10O43572 662 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 TBX19O60806 448 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ERN1O75460 977 aaKnown RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 CLDN14O95500 239 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ESRRAP11474 423 aaPredicted RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 IGFBP2P18065 325 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ACVR2AP27037 513 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 NCBP2P52298 156 aaKnown RBP eCLIP9.72□□□□□ -0.85
CD44-227ENST00000528086 WDR4P57081 412 aaKnown RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 RPL38P63173 70 aaKnown RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 PLCXD2Q0VAA5 305 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 PMPCAQ10713 525 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 GAB1Q13480 694 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 C6orf136Q5SQH8 315 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 SH2D4BQ5SQS7 431 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 APOOLQ6UXV4 268 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 IKBIPQ70UQ0 350 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 NUP54Q7Z3B4 507 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ZAR1Q86SH2 424 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 FAM9CQ8IZT9 166 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 CLYBLQ8N0X4 340 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 NAXEQ8NCW5 288 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 MARVELD3Q96A59 401 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 SDCCAG3Q96C92 435 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 ZNF764Q96H86 408 aaPredicted RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 ZNF597Q96LX8 424 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 JSRP1Q96MG2 331 aaPredicted RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 ADOQ96SZ5 270 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 TIMP4Q99727 224 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 TTYH2Q9BSA4 534 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 G6PC3Q9BUM1 346 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 TRIM8Q9BZR9 551 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 TP63Q9H3D4 680 aaPredicted RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 REEP4Q9H6H4 257 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 SERHLQ9NQF3 203 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 PFDN4Q9NQP4 134 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 RYDENQ9NUL5 291 aaKnown RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 QPCTLQ9NXS2 382 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 PRODH2Q9UF12 536 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 Q9UFV3 132 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 MID2Q9UJV3 735 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 FBXL2Q9UKC9 423 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 BOKQ9UMX3 212 aaPredicted RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 WBP11Q9Y2W2 641 aaKnown RBP9.72□□□□□ -0.85
CD44-227ENST00000528086 SLC6A5Q9Y345 797 aa9.72□□□□□ -0.85
CD44-227ENST00000528086 WDR91A4D1P6 747 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 TP53I11O14683 189 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 RGS14O43566 566 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 FADS1O60427 444 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 PEX11AO75192 247 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 CRCPO75575 148 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 SNX4O95219 450 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 SNRPB2P08579 225 aaKnown RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 LAMP1P11279 417 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 CYP4B1P13584 511 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 MPIP34949 423 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 MAN2A2P49641 1150 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 CASP6P55212 293 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 KRTAP10-9P60411 292 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 DCAF7P61962 342 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 PTGR1Q14914 329 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 GALNTL6Q49A17 601 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 WIPI1Q5MNZ9 446 aaPredicted RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 BEND6Q5SZJ8 279 aaPredicted RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 CEP85LQ5SZL2 805 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 VASNQ6EMK4 673 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 ZNF585AQ6P3V2 769 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 MTFR2Q6P444 385 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 PLXDC2Q6UX71 529 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 ANGPTL8Q6UXH0 198 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 YRDCQ86U90 279 aaKnown RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 SLC44A2Q8IWA5 706 aaPredicted RBP9.71□□□□□ -0.86
CD44-227ENST00000528086 RIMKLAQ8IXN7 391 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 KRTCAP2Q8N6L1 136 aa9.71□□□□□ -0.86
CD44-227ENST00000528086 ZNF781Q8N8C0 355 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms