RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TPOP07202 933 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 VIMP08670 466 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 ALDOCP09972 364 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 TROVE2P10155 538 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS28-204ENST00000526054 RFC3P40938 356 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 MC3RP41968 323 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 FRKP42685 505 aaPredicted RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 KIR3DL1P43629 444 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 MANFP55145 182 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 STX1BP61266 288 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CBX1P83916 185 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 EXOSC7Q15024 291 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 GSTA3Q16772 222 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 MPEG1Q2M385 716 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 PDCD4Q53EL6 469 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 OPN5Q6U736 354 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 TMEM107Q6UX40 140 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CAMKMTQ7Z624 323 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 FGD2Q7Z6J4 655 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CD163Q86VB7 1156 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 CHERPQ8IWX8 916 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 RIMKLAQ8IXN7 391 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 GPALPP1Q8IXQ4 340 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 TAGAPQ8N103 731 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 ZNF615Q8N8J6 731 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 OR52R1Q8NGF1 315 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 C16orf52Q8NHV5 167 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 FAM57AQ8TBR7 257 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 STON2Q8WXE9 905 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 ASB15Q8WXK1 588 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 TESCQ96BS2 214 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 COQ8BQ96D53 544 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 OR52B2Q96RD2 323 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 RASL10BQ96S79 203 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 DMRTA2Q96SC8 542 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 DUSP26Q9BV47 211 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 BHLHE41Q9C0J9 482 aaPredicted RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 CCDC134Q9H6E4 229 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 DDX18Q9NVP1 670 aaKnown RBP9.34□□□□□ -0.91
VPS28-204ENST00000526054 COQ3Q9NZJ6 369 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 TACC2O95359 2948 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 C2CD3Q4AC94 2353 aa9.34□□□□□ -0.91
VPS28-204ENST00000526054 NUP214P35658 2090 aaPredicted RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 ZFHX3Q15911 3703 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 A0A087WV62 115 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 A0A1B0GTH9 108 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 A0A1W2PRB8 838 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 TMEM200CA6NKL6 621 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 A8MVJ9 347 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 E9PBE3 544 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 PLOD2O00469 737 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 ADAM10O14672 748 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 PEX1O43933 1283 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 HS6ST1O60243 411 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 SHOX2O60902 331 aaPredicted RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 LAMP1P11279 417 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 S1PR1P21453 382 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 GPX3P22352 226 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 LSP1P33241 339 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 PTGS2P35354 604 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 IDH3AP50213 366 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 NME5P56597 212 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 NRG3P56975 720 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 RIPPLY3P57055 190 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 GPR85P60893 370 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 DCAF7P61962 342 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 ZNF155Q12901 538 aaPredicted RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 MLC1Q15049 377 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 PGS1Q32NB8 556 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 LSM12Q3MHD2 195 aaKnown RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 TRMT12Q53H54 448 aaKnown RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 TMEM198Q66K66 360 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 MEX3BQ6ZN04 569 aaKnown RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 ZNF551Q7Z340 670 aaPredicted RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 SULF2Q8IWU5 870 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 DND1Q8IYX4 353 aaKnown RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 SLC15A4Q8N697 577 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 GLB1L3Q8NCI6 653 aaPredicted RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 C17orf47Q8NEP4 570 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 VPS37AQ8NEZ2 397 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 OR7G2Q8NG99 324 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 OR5P2Q8WZ92 322 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 TP53INP1Q96A56 240 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 ELP4Q96EB1 424 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 C14orf79Q96F83 325 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 SPOCK3Q9BQ16 436 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 EBF4Q9BQW3 602 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 LIN28AQ9H9Z2 209 aaKnown RBP9.33□□□□□ -0.92
VPS28-204ENST00000526054 C3orf14Q9HBI5 128 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 NEUROD4Q9HD90 331 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 NPHS2Q9NP85 383 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 FGFR1OP2Q9NVK5 253 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 HPF1Q9NWY4 346 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 TAS2R9Q9NYW1 312 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 ZIM2Q9NZV7 527 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 DCTN4Q9UJW0 460 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 ERVK-11Q9UQG0 969 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 GPR45Q9Y5Y3 372 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 CCDC168Q8NDH2 2452 aa9.33□□□□□ -0.92
VPS28-204ENST00000526054 CAPN14A8MX76 684 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms