RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 RNF13O43567 381 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 APOC1P02654 83 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ADRB3P13945 408 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 RPS26P11Q5JNZ5 115 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 MPP7Q5T2T1 576 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 TCEAL6Q6IPX3 200 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 FIGNL1Q6PIW4 674 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 LIMS2Q7Z4I7 341 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 TRIM46Q7Z4K8 759 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 OR4N5Q8IXE1 308 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 PARP16Q8N5Y8 322 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 GATSQ8NAP1 163 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 DMRT3Q9NQL9 472 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CREBZFQ9NS37 354 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ARID2Q68CP9 1835 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 OR6C74A6NCV1 312 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 M0R3H8 397 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 EIF1AYO14602 144 aaKnown RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 LRRTM2O43300 516 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 S1PR1P21453 382 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 HOXD9P28356 352 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 SIM1P81133 766 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 KCNJ8Q15842 424 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CTU2Q2VPK5 515 aaKnown RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ALKBH2Q6NS38 261 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ARHGAP11AQ6P4F7 1023 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 SHFQ7M4L6 423 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CCDC28AQ8IWP9 274 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 C12orf76Q8N812 135 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 NXPE2Q96DL1 559 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CHFRQ96EP1 664 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 SGTBQ96EQ0 304 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 KLHDC7BQ96G42 594 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 MTG2Q9H4K7 406 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 RNF186Q9NXI6 227 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 KLRF1Q9NZS2 232 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 A0A1B0GVI7 797 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 DISC1C4P0D8 188 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CDC123O75794 336 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CSTBP04080 98 aaKnown RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 H2AFB2P0C5Z0 115 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 RNF144AP50876 292 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 PLBD1Q6P4A8 553 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 BAIAP2L2Q6UXY1 529 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ZNF566Q969W8 418 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 TMEM41AQ96HV5 264 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 PTCHD1Q96NR3 888 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 DOK1Q99704 481 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 PELI2Q9HAT8 420 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 CD93Q9NPY3 652 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 C13orf42A0A1B0GVH6 325 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 HEPACAM2A8MVW5 462 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 HCRTR2O43614 444 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 GP2P55259 537 aaKnown RBP13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ISL1P61371 349 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ACTA2P62736 377 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ACTG2P63267 376 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ALG1LQ6GMV1 187 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 ORAI3Q9BRQ5 295 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 SLC2A4RGQ9NR83 387 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 NPAP1Q9NZP6 1156 aa13.09□□□□□ -0.31
SYNPO-205ENST00000522122 OR5K4A6NMS3 321 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 SCGNO76038 276 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 ITGA5P08648 1049 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 PDHA2P29803 388 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 ADPRMQ3LIE5 342 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.08□□□□□ -0.31
SYNPO-205ENST00000522122 TMPRSS12Q86WS5 348 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 B3GNT7Q8NFL0 401 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 OR4K17Q8NGC6 315 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 OR5AR1Q8NGP9 310 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 HMGCLL1Q8TB92 370 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 DOK4Q8TEW6 326 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 ASB11Q8WXH4 323 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 GGHQ92820 318 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 ISG20Q96AZ6 181 aaKnown RBP13.08□□□□□ -0.31
SYNPO-205ENST00000522122 AMBRA1Q9C0C7 1298 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 LINC00597Q9H2U6 94 aa13.08□□□□□ -0.31
SYNPO-205ENST00000522122 SRA1Q9HD15 236 aaKnown RBP13.08□□□□□ -0.31
SYNPO-205ENST00000522122 CENPBD1B2RD01 187 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 RNGTTO60942 597 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 RNH1P13489 461 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 DDCP20711 480 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 CFL1P23528 166 aaKnown RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 NNATQ16517 81 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 FRMPD2BQ6IN97 320 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SBSNQ6UWP8 590 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 TMIEQ8NEW7 156 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 OR8S1Q8NH09 359 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 TMEM30AQ9NV96 361 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 HPF1Q9NWY4 346 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 NUP50Q9UKX7 468 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 TRAPPC13A5PLN9 417 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 C11orf98E9PRG8 122 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 TOXO94900 526 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 HCKP08631 526 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 SPARCP09486 303 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 C21orf33P30042 268 aaPredicted RBP13.08□□□□□ -0.32
SYNPO-205ENST00000522122 NR4A2P43354 598 aa13.08□□□□□ -0.32
SYNPO-205ENST00000522122 RAB12Q6IQ22 244 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms