RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 RFTN2Q52LD8 501 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ARL13AQ5H913 290 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-215ENST00000519474 TBCELQ5QJ74 424 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 TMEM81Q6P7N7 255 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 EMBQ6PCB8 327 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 RNF165Q6ZSG1 346 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 PACS2Q86VP3 889 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 SRRM1Q8IYB3 904 aaKnown RBP8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ZNF295-AS1Q8N0V1 137 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 CLYBLQ8N0X4 340 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 EID3Q8N140 333 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ACBD4Q8NC06 268 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 OR7G2Q8NG99 324 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 OR2T11Q8NH01 316 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 TCP10LQ8TDR4 215 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 RND1Q92730 232 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ERP27Q96DN0 273 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 OMA1Q96E52 524 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 APOPT1Q96IL0 206 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 VSTM2LQ96N03 204 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 RILPQ96NA2 401 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 FAM111AQ96PZ2 611 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 BBS4Q96RK4 519 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 TIMP4Q99727 224 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 TTYH2Q9BSA4 534 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 MECRQ9BV79 373 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 UCK2Q9BZX2 261 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ENKD1Q9H0I2 346 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 UBQLN3Q9H347 655 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ZNF703Q9H7S9 590 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-215ENST00000519474 MYNNQ9NPC7 610 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 PFDN4Q9NQP4 134 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 ALKBH4Q9NXW9 302 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 BAIAP2L1Q9UHR4 511 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 MID2Q9UJV3 735 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 RNF6Q9Y252 685 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 TRAF6Q9Y4K3 522 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 FAM215AQ9Y5M1 114 aa8.55□□□□□ -1.04
HDAC3-215ENST00000519474 SPTAN1Q13813 2472 aaKnown RBP8.55□□□□□ -1.04
HDAC3-215ENST00000519474 DOPEY1Q5JWR5 2465 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 A0A087WV62 115 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 A0A1W2PRQ8 180 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 FRG2CA6NGY1 282 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 PLOD2O00469 737 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 GNB5O14775 395 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ACOX3O15254 700 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TYROBPO43914 113 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 NPHS1O60500 1241 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TSPAN2O60636 221 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 CRCPO75575 148 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 REM1O75628 298 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 JUNP05412 331 aaKnown RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 HPNP05981 417 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 SNRPB2P08579 225 aaKnown RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 HOXD4P09016 255 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 GLI4P10075 376 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ACVR2AP27037 513 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ARRB2P32121 409 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TMED10P49755 219 aaKnown RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 CDK9P50750 372 aaKnown RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 PSG6Q00889 435 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ZNF763Q0D2J5 394 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 NNATQ16517 81 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 WLSQ5T9L3 541 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TIGD3Q6B0B8 471 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 SLC30A6Q6NXT4 461 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 NPSR1Q6W5P4 371 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 CCDC71Q8IV32 467 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 LIX1LQ8IVB5 337 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 MCEMP1Q8IX19 187 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 MREGQ8N565 214 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 WDSUB1Q8N9V3 476 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ANKK1Q8NFD2 765 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 OR4N2Q8NGD1 307 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 CA5BP1Q8WTZ4 195 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TMBIM1Q969X1 311 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 SARAFQ96BY9 339 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ELP4Q96EB1 424 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 THOC1Q96FV9 657 aaKnown RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TMEM41AQ96HV5 264 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 FCRL1Q96LA6 429 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 TRMOQ9BU70 441 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 SLC6A15Q9H2J7 730 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 RABEP2Q9H5N1 569 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 EXO5Q9H790 373 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 FOLH1BQ9HBA9 442 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 LRTM1Q9HBL6 345 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 C1orf109Q9NX04 203 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 COQ3Q9NZJ6 369 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 ZDHHC2Q9UIJ5 367 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 RAB21Q9UL25 225 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 C19orf53Q9UNZ5 99 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-215ENST00000519474 FIS1Q9Y3D6 152 aa8.54□□□□□ -1.04
HDAC3-215ENST00000519474 OR6C70A6NIJ9 312 aa8.53□□□□□ -1.04
HDAC3-215ENST00000519474 AHRRA9YTQ3 701 aa8.53□□□□□ -1.04
HDAC3-215ENST00000519474 KDM4EB2RXH2 506 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-215ENST00000519474 TMEM233B4DJY2 109 aa8.53□□□□□ -1.04
HDAC3-215ENST00000519474 UPK1AO00322 258 aa8.53□□□□□ -1.04
HDAC3-215ENST00000519474 LSM1O15116 133 aaKnown RBP8.53□□□□□ -1.04
HDAC3-215ENST00000519474 RGS14O43566 566 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms