RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 RC3H2Q9HBD1 1191 aaKnown RBP9.1□□□□□ -0.95
VCAN-210ENST00000513960 IL36AQ9UHA7 158 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 MGAT4BQ9UQ53 548 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 DYRK1BQ9Y463 629 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 SERTM1A2A2V5 107 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 SHOXO15266 292 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 SLC16A8O95907 504 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 ALPPL2P10696 532 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 HSD3B1P14060 373 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 TIMP2P16035 220 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 ELK1P19419 428 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 CXCL3P19876 107 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 CD22P20273 847 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 KELP23276 732 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 HSD3B2P26439 372 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 TIA1P31483 386 aaKnown RBP eCLIP9.1□□□□□ -0.95
VCAN-210ENST00000513960 XCR1P46094 333 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 CTSCP53634 463 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 ST8SIA6P61647 398 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 TMEM115Q12893 351 aaPredicted RBP9.1□□□□□ -0.95
VCAN-210ENST00000513960 SLBPQ14493 270 aaKnown RBP eCLIP9.1□□□□□ -0.95
VCAN-210ENST00000513960 GRHL2Q6ISB3 625 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 WASH2PQ6VEQ5 465 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 ZNF782Q6ZMW2 699 aaPredicted RBP9.1□□□□□ -0.95
VCAN-210ENST00000513960 HDDC2Q7Z4H3 204 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 ADIPOR2Q86V24 386 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 OR4C15Q8NGM1 316 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 WDR20Q8TBZ3 569 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 ASB12Q8WXK4 309 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 RBPMSQ93062 196 aaKnown RBP9.1□□□□□ -0.95
VCAN-210ENST00000513960 TMEM19Q96HH6 336 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 PPA2Q9H2U2 334 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 SPNS1Q9H2V7 528 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 REEP4Q9H6H4 257 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 KCNK12Q9HB15 430 aa9.1□□□□□ -0.95
VCAN-210ENST00000513960 PRAMEF25A6NGN4 478 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 RTCAO00442 366 aaKnown RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 KPNA3O00505 521 aaPredicted RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 TRIM3O75382 744 aaPredicted RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 MT-ND4P03905 459 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 SEMG1P04279 462 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ALDOBP05062 364 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 DDX6P26196 483 aaKnown RBP eCLIP9.09□□□□□ -0.95
VCAN-210ENST00000513960 ACSL1P33121 698 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 MAPK9P45984 424 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 MTNR1AP48039 350 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ARHGDIBP52566 201 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 GRIN2CQ14957 1233 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 PLK5Q496M5 336 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 HENMT1Q5T8I9 393 aaKnown RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 HIST2H2AA3Q6FI13 130 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 REEP3Q6NUK4 255 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 RTL4Q6ZR62 310 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 OR4K5Q8NGD3 323 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 OR51G2Q8NGK0 314 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 WDR48Q8TAF3 677 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ST8SIA4Q92187 359 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 NXPE2Q96DL1 559 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 TEX12Q9BXU0 123 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 MTG2Q9H4K7 406 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 SPATA6Q9NWH7 488 aaPredicted RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 CACNG2Q9Y698 323 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 WNT6Q9Y6F9 365 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 SCN8AQ9UQD0 1980 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 A0A1W2PPL8 197 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 HEPACAM2A8MVW5 462 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 H0YIV9 168 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 GABRPO00591 440 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 PGRMC2O15173 223 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 FRS3O43559 492 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 CHP2O43745 196 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 SCN2BO60939 215 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 GCM2O75603 506 aaPredicted RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 FGF19O95750 216 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 IL3P08700 152 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 MAP2K6P52564 334 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 LIM2P55344 173 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 LSM11P83369 360 aaKnown RBP eCLIP9.09□□□□□ -0.95
VCAN-210ENST00000513960 GRK1Q15835 563 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 CCSMST1Q4G0I0 132 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ZNF805Q5CZA5 627 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ACSM5Q6NUN0 579 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 MED27Q6P2C8 311 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 LYPD4Q6UWN0 246 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ZNF366Q8N895 744 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 RASGEF1AQ8N9B8 481 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 OR8K5Q8NH50 307 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 FBXW5Q969U6 566 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ELMOD3Q96FG2 381 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 METTL2AQ96IZ6 378 aaKnown RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 METTL17Q9H7H0 456 aaPredicted RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 BRF2Q9HAW0 419 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 IMP3Q9NV31 184 aaKnown RBP9.09□□□□□ -0.95
VCAN-210ENST00000513960 CNIH4Q9P003 139 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 PFDN2Q9UHV9 154 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 PCDHGB7Q9Y5F8 929 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 ANHXE9PGG2 379 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 L7N2F9 121 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 STATHP02808 62 aa9.09□□□□□ -0.95
VCAN-210ENST00000513960 SRPRAP08240 638 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms