RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 C18orf25Q96B23 403 aaPredicted RBP3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 FAM71F1Q96KD3 344 aaPredicted RBP3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 GBP5Q96PP8 586 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 RIT2Q99578 217 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 LITAFQ99732 161 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 MGME1Q9BQP7 344 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 URM1Q9BTM9 101 aaKnown RBP3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 TEKT3Q9BXF9 490 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 SPZ1Q9BXG8 430 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 SLC2A11Q9BYW1 496 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 OR2B2Q9GZK3 357 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 ING2Q9H160 280 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 FN3KQ9H479 309 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 CHCHD3Q9NX63 227 aaKnown RBP3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 ELOVL2Q9NXB9 296 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 SLC39A1Q9NY26 324 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 BARHL2Q9NY43 387 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 TXNDC16Q9P2K2 825 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 KCNN3Q9UGI6 736 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 STUB1Q9UNE7 303 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 SNX7Q9UNH6 387 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 NTNG1Q9Y2I2 539 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 RNF215Q9Y6U7 377 aa3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 MAP1AP78559 2803 aaPredicted RBP3.1□□□□□ -1.91
TOPBP1-208ENST00000511439 TRAV24A0A0B4J272 114 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ZNF840PA6NDX5 716 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 LRRIQ4A6NIV6 560 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ERI2A8K979 691 aaKnown RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ARPC2O15144 300 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ARHGEF9O43307 516 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 EDIL3O43854 480 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ATP6AP2O75787 350 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CEACAM4O75871 244 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 STK17BO94768 372 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 AP2A2O94973 939 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 VENTXO95231 258 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 RAF1P04049 648 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CSF2P04141 144 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 GPIP06744 558 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 FAM157CP0CG43 387 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 PDGFRAP16234 1089 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CDH3P22223 829 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ACAT1P24752 427 aaKnown RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 MAT2AP31153 395 aaKnown RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CASP14P31944 242 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CTNNA1P35221 906 aaKnown RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 KRT2P35908 639 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 HSD17B3P37058 310 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CA7P43166 264 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 NAGLUP54802 743 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 KCNJ10P78508 379 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 RBP5P82980 135 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CDR2Q01850 454 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 PPARDQ03181 441 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 SPAG1Q07617 926 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 KLC1Q07866 573 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 DMTNQ08495 405 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 PHKG1Q16816 387 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 TMEM30BQ3MIR4 351 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 GTDC1Q4AE62 458 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ZNF542PQ5EBM4 170 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 LCE1FQ5T754 118 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 C12orf54Q6X4T0 127 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 NOTCH2NLQ7Z3S9 236 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 GALNTL5Q7Z4T8 443 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 TRIM69Q86WT6 500 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 FAM219AQ8IW50 185 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ZBTB8OSQ8IWT0 167 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 NDUFAF2Q8N183 169 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 MARVELD2Q8N4S9 558 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 KBTBD8Q8NFY9 601 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 OR2T11Q8NH01 316 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 OR4C3Q8NH37 302 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CTCFLQ8NI51 663 aaPredicted RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 OCC1Q8TAD7 63 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ARHGAP45Q92619 1136 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 ATP6V1E2Q96A05 226 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 LRR1Q96L50 414 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 AGAP3Q96P47 875 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 FERMT1Q9BQL6 677 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 FEM1AQ9BSK4 669 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 RBM4Q9BWF3 364 aaKnown RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 SHARPINQ9H0F6 387 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 C2orf40Q9H1Z8 148 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 NEUROG2Q9H2A3 272 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 PRSS16Q9NQE7 514 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 GSN-AS1Q9NRJ2 163 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 P4HTMQ9NXG6 502 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 DDX43Q9NXZ2 648 aaKnown RBP3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 GPR83Q9NYM4 423 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 SPASTQ9UBP0 616 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 TUBGCP4Q9UGJ1 667 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 CYTH4Q9UIA0 394 aa3.09□□□□□ -1.91
TOPBP1-208ENST00000511439 SONP18583 2426 aaKnown RBP3.09□□□□□ -1.92
TOPBP1-208ENST00000511439 A0A0U1RQS6 177 aa3.08□□□□□ -1.92
TOPBP1-208ENST00000511439 ARGFXA6NJG6 315 aa3.08□□□□□ -1.92
TOPBP1-208ENST00000511439 LMO7DNF2Z398 122 aa3.08□□□□□ -1.92
TOPBP1-208ENST00000511439 KLF11O14901 512 aa3.08□□□□□ -1.92
TOPBP1-208ENST00000511439 TRMUO75648 421 aaKnown RBP3.08□□□□□ -1.92
TOPBP1-208ENST00000511439 GSRP00390 522 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms