RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PARP16Q8N5Y8 322 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 OR52H1Q8NGJ2 320 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 FEVQ99581 238 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 GCM1Q9NP62 436 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 ATF5Q9Y2D1 282 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 C2orf78A6NCI8 922 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 CXorf49A8MYA2 514 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 SMLR1H3BR10 107 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 SOX1O00570 391 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 CYTIPO60759 359 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 SNCGO76070 127 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 ADRB1P08588 477 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 MPC1LP0DKB6 136 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 MC3RP41968 323 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 TAS2R46P59540 309 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 VARS2Q5ST30 1063 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 KIAA0907Q7Z7F0 614 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 ZNF561Q8N587 486 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 PHOSPHO1Q8TCT1 267 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 PHYHIPQ92561 330 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 ESAMQ96AP7 390 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 TMPRSS5Q9H3S3 457 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 CHRNA9Q9UGM1 479 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 POLHQ9Y253 713 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 PRELID3BQ9Y3B1 194 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 ABCA9Q8IUA7 1624 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 TSPOAP1O95153 1857 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 ZNF536O15090 1300 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 TNFSF8P32971 234 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 SPCS2Q15005 226 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 INAVAQ3KP66 663 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 TIPARPQ7Z3E1 657 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 FBXO15Q8NCQ5 510 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 SIGLEC10Q96LC7 697 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 OR6C2Q9NZP2 312 aa10.7□□□□□ -0.7
LIMCH1-208ENST00000508501 CLDN5O00501 218 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 NIPSNAP2O75323 286 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 LPLP06858 475 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 MAT2AP31153 395 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ACVR1BP36896 505 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 HBG1P69891 147 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 HBG2P69892 147 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 BCL7AQ4VC05 210 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ZMAT1Q5H9K5 638 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 AGTRAPQ6RW13 159 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ADIPOR2Q86V24 386 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SULF2Q8IWU5 870 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 BSCL2Q96G97 398 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SLC29A1Q99808 456 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 GPR83Q9NYM4 423 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ZNF230Q9UIE0 474 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SARDHQ9UL12 918 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 COPS3Q9UNS2 423 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SLC22A14Q9Y267 594 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 HRH3Q9Y5N1 445 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SLC22A7Q9Y694 548 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 MSTNO14793 375 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 FANCGO15287 622 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 GLUD1P00367 558 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 JUNDP17535 347 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 KITLGP21583 273 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 TIA1P31483 386 aaKnown RBP eCLIP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ACTR1AP61163 376 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 EEF1DP3Q658K8 133 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 USP51Q70EK9 711 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 CILP2Q8IUL8 1156 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 KLHDC8BQ8IXV7 354 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 OR4K14Q8NGD5 310 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 OR51L1Q8NGJ5 315 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SLC16A10Q8TF71 515 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 FAM83CQ9BQN1 747 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 NIFKQ9BYG3 293 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 NKX6-2Q9C056 277 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 DNMT3AQ9Y6K1 912 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 RIMBP3CA6NJZ7 1639 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 RIMBP3BA6NNM3 1639 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 RIMBP3Q9UFD9 1639 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 CCDC163A0A0D9SF12 145 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 MTMR11A4FU01 709 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ARGFXA6NJG6 315 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 TMEM233B4DJY2 109 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 SPP1P10451 314 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 CDKN1CP49918 316 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 DBPQ10586 325 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 VAMP3Q15836 100 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 MICAQ29983 383 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 TIGD3Q6B0B8 471 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 NDUFAF7Q7L592 441 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 MRPL10Q7Z7H8 261 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ADAMTS18Q8TE60 1221 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 PSMG2Q969U7 264 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 TMEM18Q96B42 140 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 TBC1D20Q96BZ9 403 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 METTL2AQ96IZ6 378 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 HOXD1Q9GZZ0 328 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ZNF586Q9NXT0 402 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 TAS2R16Q9NYV7 291 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 NFAT5O94916 1531 aa10.69□□□□□ -0.7
LIMCH1-208ENST00000508501 ADCY10Q96PN6 1610 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms