RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 EPB42P16452 691 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 GRK2P25098 689 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 PSPHP78330 225 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 PON3Q15166 354 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 HP1BP3Q5SSJ5 553 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 OR6K3Q8NGY3 331 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 FNDC9Q8TBE3 224 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 C19orf24Q9BVV8 132 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 PINK1Q9BXM7 581 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 BARX1Q9HBU1 254 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 MAT2BQ9NZL9 334 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 WHRNQ9P202 907 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 LPAR3Q9UBY5 353 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 PRODH2Q9UF12 536 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 PLLPQ9Y342 182 aa12.79□□□□□ -0.36
PRPF40A-211ENST00000493468 GOLGA6L10A0A0M3HER8 536 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 GOLGA6L10A6NI86 522 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 FOXE1O00358 373 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 PHGDHO43175 533 aaKnown RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 CBX7O95931 251 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 IGHV4-39P01824 125 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 SOD3P08294 240 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 IL11P20809 199 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 IVDP26440 423 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 GAS1P54826 345 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 EFR3AQ14156 821 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 GANABQ14697 944 aaKnown RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 ZKSCAN8Q15776 578 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 EXOC3L2Q2M3D2 409 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 DNAJC14Q6Y2X3 702 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 WFDC8Q8IUA0 241 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 METTL25Q8N6Q8 603 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 FADS6Q8N9I5 356 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 ADCY4Q8NFM4 1077 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 LILRB1Q8NHL6 650 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 STAG3L4Q8TBR4 150 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 EXT2Q93063 718 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 TMBIM1Q969X1 311 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 GTPBP3Q969Y2 492 aaKnown RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 BTBD9Q96Q07 612 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 BRINP2Q9C0B6 783 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 ACTR6Q9GZN1 396 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 STMN4Q9H169 189 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 CAB39LQ9H9S4 337 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 BCAP29Q9UHQ4 241 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 ADAM29Q9UKF5 820 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 GPR55Q9Y2T6 319 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 EMC9Q9Y3B6 208 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 RNF115Q9Y4L5 304 aa12.78□□□□□ -0.36
PRPF40A-211ENST00000493468 A0A096LNT2 108 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 TSPAN2O60636 221 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 ADAM11O75078 769 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 STMN1P16949 149 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 PSMB1P20618 241 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 CDC25BP30305 580 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 DEKP35659 375 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 CDKN1AP38936 164 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 EMDP50402 254 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 NEK2P51955 445 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 SUCLG1P53597 346 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 RPS3AP61247 264 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 EXOSC7Q15024 291 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 FAM111BQ6SJ93 734 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 MYLK4Q86YV6 388 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 OR4K17Q8NGC6 315 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 WDR20Q8TBZ3 569 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 GFM2Q969S9 779 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 ATOH8Q96SQ7 321 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 GPR22Q99680 433 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 GRIP2Q9C0E4 1043 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 CES1P1Q9UKY3 287 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 LIPT1Q9Y234 373 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 GPR52Q9Y2T5 361 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 MTO1Q9Y2Z2 717 aaKnown RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 MAGED1Q9Y5V3 778 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 PCNX3Q9H6A9 2034 aa12.77□□□□□ -0.37
PRPF40A-211ENST00000493468 CADP27708 2225 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 H0YC42 278 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 KERAO60938 352 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 SS18L1O75177 396 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 REM1O75628 298 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 GBAP04062 536 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 TCEA1P23193 301 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 TPD52P55327 224 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 ARL4CP56559 192 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 GPX6P59796 221 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 RAET1LQ5VY80 246 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 OR5M10Q6IEU7 315 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 SLC48A1Q6P1K1 146 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 BEND4Q6ZU67 534 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 ISCA2Q86U28 154 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 TEX9Q8N6V9 391 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 OR52R1Q8NGF1 315 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 RAB3IL1Q8TBN0 382 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 ACTRT1Q8TDG2 376 aa12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 SMAP2Q8WU79 429 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 C11orf24Q96F05 449 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 GMPPAQ96IJ6 420 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-211ENST00000493468 HS6ST2Q96MM7 605 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms