RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ALPK1Q96QP1 1244 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 GABARAPL1Q9H0R8 117 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 PRDM9Q9NQV7 894 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 SACM1LQ9NTJ5 587 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 GIMAP4Q9NUV9 329 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 BLOC1S6Q9UL45 172 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 PADI2Q9Y2J8 665 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 NAALAD2Q9Y3Q0 740 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 SAMHD1Q9Y3Z3 626 aaKnown RBP11.39□□□□□ -0.59
HDAC6-230ENST00000488543 DPM1O60762 260 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 UGT2B11O75310 529 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 MED26O95402 600 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 CER1O95813 267 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SYPP08247 313 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 OR12D1P0DN82 309 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 BMP4P12644 408 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ITIH1P19827 911 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF10P21506 573 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 EPHA4P54764 986 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SF3A2Q15428 464 aaKnown RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 CARTPTQ16568 116 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SYT16Q17RD7 645 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 TRIM16LQ309B1 348 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 JAZF1Q86VZ6 243 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 CA13Q8N1Q1 262 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 TTC29Q8NA56 475 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ATG16L2Q8NAA4 619 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 OR5D16Q8NGK9 328 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 RORBQ92753 470 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ELP4Q96EB1 424 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 MAGED4Q96JG8 741 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 RDH12Q96NR8 316 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 CCDC3Q9BQI4 270 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 REPIN1Q9BWE0 567 aaKnown RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SOHLH2Q9NX45 425 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 KIF17Q9P2E2 1029 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 RAB23Q9ULC3 237 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF780BQ9Y6R6 833 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 A0A1W2PQM1 296 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 CYR61O00622 381 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 KHNYNO15037 678 aaKnown RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SLC16A6O15403 523 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SERPINB7O75635 380 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 IMPDH2P12268 514 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF12P17014 697 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 MPIP34949 423 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 SOX18P35713 384 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 MC3RP41968 323 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 MAGEA8P43361 318 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 GPR3P46089 330 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 FUT5Q11128 374 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 NR0B2Q15466 257 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 IFI44LQ53G44 452 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF574Q6ZN55 896 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 RABEPKQ7Z6M1 372 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ANKRD13BQ86YJ7 626 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 HIPK1Q86Z02 1210 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ZDHHC12Q96GR4 267 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ANKRA2Q9H9E1 313 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 MS4A12Q9NXJ0 267 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 NDUFAF4Q9P032 175 aa11.38□□□□□ -0.59
HDAC6-230ENST00000488543 ASCC3Q8N3C0 2202 aaKnown RBP11.38□□□□□ -0.59
HDAC6-230ENST00000488543 TLCD2A6NGC4 264 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 CLDN25C9JDP6 229 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 M0R3G1 203 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 EMC8O43402 210 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 FHP07954 510 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 KHKP50053 298 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 NUDT6P53370 316 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SLC35A2P78381 396 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 CCL7P80098 99 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SYPL1Q16563 259 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SOWAHCQ53LP3 525 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 PLA2G2CQ5R387 149 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SZRD1Q7Z422 152 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 OR4N5Q8IXE1 308 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 OR4K14Q8NGD5 310 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 OR56A1Q8NGH5 318 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 OR52J3Q8NH60 311 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SPPL2AQ8TCT8 520 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 APOBEC4Q8WW27 367 aaKnown RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 KAT2AQ92830 837 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 MOAP1Q96BY2 351 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 OTUB1Q96FW1 271 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 C16orf58Q96GQ5 468 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF285Q96NJ3 590 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 BTBD2Q9BX70 525 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 RNF167Q9H6Y7 350 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 AKIP1Q9NQ31 210 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 EPHA6Q9UF33 1036 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SEC16AO15027 2179 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 PRR33A8MZF0 331 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 SGK494L7N484 410 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 DUX1O43812 170 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 PCDHGA12O60330 932 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 JRKO75564 520 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 MFN2O95140 757 aa11.37□□□□□ -0.59
HDAC6-230ENST00000488543 HMGN2P05204 90 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms