RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 SRP72O76094 671 aaKnown RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PROSCO94903 275 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 MBD3O95983 291 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 GAS8O95995 478 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 KRT6BP04259 564 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 IL6P05231 212 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CHRM5P08912 532 aaPredicted RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 GSTM1P09488 218 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CCDC166P0CW27 439 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 SELLP14151 372 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CD99P14209 185 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 ATP1B2P14415 290 aaPredicted RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CFPP27918 469 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 KCNJ5P48544 419 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 KRT6CP48668 564 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 SLC7A2P52569 658 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CAPZA1P52907 286 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 HNRNPH2P55795 449 aaKnown RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 EIF3BP55884 814 aaKnown RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 KRTAP10-9P60411 292 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 OCA2Q04671 838 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CHRNEQ04844 493 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 Q0VFX4 171 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 GRM7Q14831 915 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PDCD1Q15116 288 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 NOMO1Q15155 1222 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 SLC1A5Q15758 541 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 ZIC1Q15915 447 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 NDUFA5Q16718 116 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 FAM214AQ32MH5 1076 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 SLC9A4Q6AI14 798 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 RNF111Q6ZNA4 994 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 APTXQ7Z2E3 356 aaKnown RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 C1QL4Q86Z23 238 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 SPPL2CQ8IUH8 684 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 LILRA3Q8N6C8 439 aaPredicted RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 ZNF610Q8N9Z0 462 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 TTC29Q8NA56 475 aaPredicted RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 NFKBIDQ8NI38 313 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CORO2AQ92828 525 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 TANKQ92844 425 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 SAMD8Q96LT4 415 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PTCHD1Q96NR3 888 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 COPS8Q99627 209 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PKIBQ9C010 78 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 ZNF160Q9HCG1 818 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 CUTCQ9NTM9 273 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 TMEM140Q9NV12 185 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PLA2G3Q9NZ20 509 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PTGFRNQ9P2B2 879 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 GPR160Q9UJ42 338 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 ICKQ9UPZ9 632 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 MRPS7Q9Y2R9 242 aaKnown RBP6.35□□□□□ -1.39
HDAC3-209ENST00000486618 KCNK7Q9Y2U2 307 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 NFS1Q9Y697 457 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 AP4B1Q9Y6B7 739 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 U3KQV3 271 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 ACANP16112 2415 aa6.35□□□□□ -1.39
HDAC3-209ENST00000486618 PRRC2AP48634 2157 aaKnown RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 NSG1A0A0A6YYJ2 146 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 LOC390937A0A1W2PQ73 354 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 SMIM30A4D0T7 59 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 C5orf60A6NFR6 353 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 VSTM2BA6NLU5 285 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 C19orf84I3L1E1 186 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 TBX1O43435 398 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 TLX2O43763 284 aaPredicted RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 PSPNO60542 156 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 ACTL6BO94805 426 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 BMP10O95393 424 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 TGM6O95932 706 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 SERPINA7P05543 415 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 CRYGCP07315 174 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 YES1P07947 543 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 ITGALP20701 1170 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 CXCR2P25025 360 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 MST1P26927 711 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 PTPN6P29350 595 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 PDHA2P29803 388 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 NSG1P42857 185 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 RAB28P51157 221 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 ART1P52961 327 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 SNU13P55769 128 aaKnown RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 ADORA2A-AS1P86434 159 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 SCRN3Q0VDG4 424 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 KIR2DS3Q14952 304 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 TAF1AQ15573 450 aaPredicted RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 C3AR1Q16581 482 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 DECR1Q16698 335 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 PARP6Q2NL67 630 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 ZNF829Q3KNS6 432 aaPredicted RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 KRTAP19-4Q3LI73 84 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 GPR33Q49SQ1 333 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 FASTKD1Q53R41 847 aaKnown RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 CEP85LQ5SZL2 805 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 FAM182AQ5T1J6 154 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 LCE1DQ5T752 114 aa6.34□□□□□ -1.39
HDAC3-209ENST00000486618 E4F1Q66K89 784 aaPredicted RBP6.34□□□□□ -1.39
HDAC3-209ENST00000486618 CLEC6AQ6EIG7 209 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms