RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PLSCR2Q9NRY7 297 aa14.6□□□□□ -0.07
UPF3A-208ENST00000484246 UBR5O95071 2799 aaPredicted RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 GOLGA8QA0A0J9YX86 632 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 GOLGA8OA6NCC3 632 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 GOLGA8NF8WBI6 632 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 ACOT7O00154 380 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 SNX4O95219 450 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 IRX1P78414 480 aaPredicted RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 MRPL49Q13405 166 aaKnown RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 SNTA1Q13424 505 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 ZNHIT3Q15649 155 aaPredicted RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 HSP90B2PQ58FF3 399 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 ANXA8L1Q5VT79 327 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 MFSD12Q6NUT3 480 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 FAM47EQ6ZV65 393 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 GLB1L3Q8NCI6 653 aaPredicted RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 MOAP1Q96BY2 351 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 COL21A1Q96P44 957 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 OR52B2Q96RD2 323 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 CCDC28BQ9BUN5 200 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 ANGPTL4Q9BY76 406 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 TTTY12Q9BZ98 90 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 Q9N2J8 555 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 FAM120CQ9NX05 1096 aaKnown RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 GIN1Q9NXP7 522 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 ZIM2Q9NZV7 527 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 SEC14L3Q9UDX4 400 aa14.59□□□□□ -0.07
UPF3A-208ENST00000484246 BOKQ9UMX3 212 aaPredicted RBP14.59□□□□□ -0.07
UPF3A-208ENST00000484246 LRRC3CA6NJW4 275 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 DIAPH2O60879 1101 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 UGT2B11O75310 529 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 TRIM3O75382 744 aaPredicted RBP14.58□□□□□ -0.08
UPF3A-208ENST00000484246 NME6O75414 186 aaPredicted RBP14.58□□□□□ -0.08
UPF3A-208ENST00000484246 SOX30O94993 753 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 NKX2-2O95096 273 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 C6orf47O95873 294 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 PIGAP37287 484 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 DNASE1L1P49184 302 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 PNLIPRP2P54317 469 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 MRPS22P82650 360 aaKnown RBP14.58□□□□□ -0.08
UPF3A-208ENST00000484246 EFR3AQ14156 821 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 VPS26BQ4G0F5 336 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 SPANXN4Q5MJ08 99 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 ACAD11Q709F0 780 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 SLC22A16Q86VW1 577 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 SLC44A2Q8IWA5 706 aaPredicted RBP14.58□□□□□ -0.08
UPF3A-208ENST00000484246 PRR22Q8IZ63 422 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 NUP43Q8NFH3 380 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 OR56A1Q8NGH5 318 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 NUDT8Q8WV74 236 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 TMBIM1Q969X1 311 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 TMEM41AQ96HV5 264 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 TEX37Q96LM6 180 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 SIKE1Q9BRV8 207 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 DOHHQ9BU89 302 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 CXorf36Q9H7Y0 433 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 ZFP64Q9NPA5 681 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 ZCCHC3Q9NUD5 404 aaKnown RBP14.58□□□□□ -0.08
UPF3A-208ENST00000484246 QPCTLQ9NXS2 382 aa14.58□□□□□ -0.08
UPF3A-208ENST00000484246 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.58□□□□□ -0.08
UPF3A-208ENST00000484246 PRSS51A0A1B0GVH4 220 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 TFECO14948 347 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 ASNA1O43681 348 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 EDF1O60869 148 aaKnown RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 STSP08842 583 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 EFNA1P20827 205 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 CASP3P42574 277 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 PRIM2P49643 509 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 IDH3AP50213 366 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 UFM1P61960 85 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 KCNJ2P63252 427 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 HBA1P69905 142 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 PHC1P78364 1004 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 LRRC74AQ0VAA2 488 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 ELOAQ14241 798 aaKnown RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 CMPK2Q5EBM0 449 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 PRAMEF20Q5VT98 475 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 OR4F3Q6IEY1 312 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 SLC30A6Q6NXT4 461 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 BHLHB9Q6PI77 547 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 GFRALQ6UXV0 394 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 CHERPQ8IWX8 916 aaKnown RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 GHDCQ8N2G8 530 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 FAM109AQ8N4B1 249 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 DIO2Q92813 273 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 ZNF597Q96LX8 424 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 STACQ99469 402 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 CCDC134Q9H6E4 229 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 ZNF703Q9H7S9 590 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 TCF7L2Q9NQB0 619 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 DUSP22Q9NRW4 184 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 GPATCH2Q9NW75 528 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 TUBA8Q9NY65 449 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-208ENST00000484246 BTNL2Q9UIR0 455 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 CBLCQ9ULV8 474 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 OR10H1Q9Y4A9 318 aa14.57□□□□□ -0.08
UPF3A-208ENST00000484246 PRAMEF25A6NGN4 478 aa14.56□□□□□ -0.08
UPF3A-208ENST00000484246 NPIPA5E9PKD4 350 aa14.56□□□□□ -0.08
UPF3A-208ENST00000484246 G3V3Y1 287 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms