RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CITED1Q99966 193 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 RBM4BQ9BQ04 359 aaKnown RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 TRIM54Q9BYV2 358 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 RAB1BQ9H0U4 201 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 C12orf49Q9H741 205 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 GALNT9Q9HCQ5 603 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 INTS10Q9NVR2 710 aaKnown RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 PIH1D1Q9NWS0 290 aaKnown RBP7.09□□□□□ -1.27
USP54-211ENST00000474929 COMMD10Q9Y6G5 202 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 KCNE2Q9Y6J6 123 aa7.09□□□□□ -1.27
USP54-211ENST00000474929 A0A087X0T9 212 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 A0A0G2JMP0 313 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 A0A0G2JN53 185 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 A0A0X1KG70 313 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 MYOCOSA0A1B0GUC4 107 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 ANKDD1BA6NHY2 528 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 H3BML4 177 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 CLDN34H7C241 214 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 AP3B1O00203 1094 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 FGF17O60258 216 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 H2AFYO75367 372 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 PDE5AO76074 875 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 MBD3O95983 291 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 TMEM253P0C7T8 217 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 FAM228BP0C875 321 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 ADRA2CP18825 462 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 HIST1H1TP22492 207 aaPredicted RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 CPN2P22792 545 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 IL2RGP31785 369 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 HNRNPH1P31943 449 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 PTGDSP41222 190 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 PPOXP50336 477 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 B3GALT5-AS1P59052 145 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 COPS2P61201 443 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 HMGCS1Q01581 520 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 DHX9Q08211 1270 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 RNPS1Q15287 305 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 KLHL22Q53GT1 634 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 PCID2Q5JVF3 399 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 PDSS1Q5T2R2 415 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 UGT3A1Q6NUS8 523 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 NEPROQ6NW34 567 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 CAVIN1Q6NZI2 390 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 FAHD2BQ6P2I3 314 aaPredicted RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 FAM111BQ6SJ93 734 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 TFAP2EQ6VUC0 442 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 SYT10Q6XYQ8 523 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 TMEM64Q6YI46 380 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 Q6ZT83 130 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 KATNAL2Q8IYT4 538 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 MYO1HQ8N1T3 1032 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 OR4M2Q8NGB6 313 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 OR52B6Q8NGF0 335 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 ACTL9Q8TC94 416 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 NEU4Q8WWR8 484 aaPredicted RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 GTF3AQ92664 365 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 HGDQ93099 445 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 PPP1R14AQ96A00 147 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 FAHD2AQ96GK7 314 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 ZNF778Q96MU6 729 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 HBEGFQ99075 208 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 VRK1Q99986 396 aaPredicted RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 RPF2Q9H7B2 306 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 PTGES2Q9H7Z7 377 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 FOLH1BQ9HBA9 442 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 BEX1Q9HBH7 125 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 ANO10Q9NW15 660 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 SYBUQ9NX95 663 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 PDP1Q9P0J1 537 aaPredicted RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 TESQ9UGI8 421 aaKnown RBP7.08□□□□□ -1.28
USP54-211ENST00000474929 FBXL2Q9UKC9 423 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 CLEC4AQ9UMR7 237 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 PDE10AQ9Y233 779 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 EFR3BQ9Y2G0 817 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 CORINQ9Y5Q5 1042 aa7.08□□□□□ -1.28
USP54-211ENST00000474929 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.07□□□□□ -1.28
USP54-211ENST00000474929 GOLGA6L10A0A0M3HER8 536 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 DNAJC9-AS1A6NH13 148 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 GOLGA6L10A6NI86 522 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 OR5H1A6NKK0 313 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 AKR1B15C9JRZ8 316 aaPredicted RBP7.07□□□□□ -1.28
USP54-211ENST00000474929 GOLGA6L19H0YKK7 550 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 HRKO00198 91 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 ZIC3O60481 467 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 AIFM1O95831 613 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 IFNGR1P15260 489 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 GGT1P19440 569 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 GATA3P23771 443 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 GRK2P25098 689 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 CD40P25942 277 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 MGAT1P26572 445 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 GGT5P36269 586 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 BUD31P41223 144 aaPredicted RBP7.07□□□□□ -1.28
USP54-211ENST00000474929 EIF1AXP47813 144 aaKnown RBP7.07□□□□□ -1.28
USP54-211ENST00000474929 MRPS22P82650 360 aaKnown RBP7.07□□□□□ -1.28
USP54-211ENST00000474929 ID2Q02363 134 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 CUL1Q13616 776 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 CCNIQ14094 377 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 EFR3AQ14156 821 aa7.07□□□□□ -1.28
USP54-211ENST00000474929 MLC1Q15049 377 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms