RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FAM83FQ8NEG4 500 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 OR7G2Q8NG99 324 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 OR2W6PQ8NHA6 318 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 NRGNQ92686 78 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 ERP27Q96DN0 273 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 VSTM2LQ96N03 204 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 COL21A1Q96P44 957 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 BTBD9Q96Q07 612 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 SERHLQ9NQF3 203 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 RRAGDQ9NQL2 400 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 PCDHGB3Q9Y5G1 929 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 PTGDR2Q9Y5Y4 395 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 SPG11Q96JI7 2443 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 NUP214P35658 2090 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 AKAP6Q13023 2319 aa14.33□□□□□ -0.11
CCDC88B-205ENST00000472524 OR6C70A6NIJ9 312 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 RSL1D1O76021 490 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 CT45A8P0DMV1 189 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 CT45A9P0DMV2 189 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 UROSP10746 265 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 BMP7P18075 431 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 IL12BP29460 328 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 MC3RP41968 323 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 SNTA1Q13424 505 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 SLC25A35Q3KQZ1 300 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 CT45A2Q5DJT8 189 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 DCST1Q5T197 706 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 VASNQ6EMK4 673 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 FAM71E1Q6IPT2 247 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 TMEM107Q6UX40 140 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 TRIM46Q7Z4K8 759 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 C10orf107Q8IVU9 208 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 SLC44A2Q8IWA5 706 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 PM20D2Q8IYS1 436 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 CLYBLQ8N0X4 340 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 TNIP2Q8NFZ5 429 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 ABTB1Q969K4 478 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 NTNG2Q96CW9 530 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 TMCO6Q96DC7 493 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 ADOQ96SZ5 270 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 ZNF559Q9BR84 538 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 UGT2B28Q9BY64 529 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 PRDM14Q9GZV8 571 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 IQCGQ9H095 443 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 ANKZF1Q9H8Y5 726 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 MYNNQ9NPC7 610 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 TAS2R9Q9NYW1 312 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 MID2Q9UJV3 735 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 ZFHX3Q15911 3703 aa14.33□□□□□ -0.12
CCDC88B-205ENST00000472524 HSPB2A8KAH6 182 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 AHRRA9YTQ3 701 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 MYO1GB0I1T2 1018 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 PLOD3O60568 738 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 TSPAN2O60636 221 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 COQ9O75208 318 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 SEC22BO75396 215 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 NTSP30990 170 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 ART1P52961 327 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 SLC18A2Q05940 514 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 MYBPHQ13203 477 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 PCLAFQ15004 111 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 HSPB2Q16082 182 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 SH2D4BQ5SQS7 431 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 NOXRED1Q6NXP6 359 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 LARP4Q71RC2 724 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 OR4N2Q8NGD1 307 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 OR14L1PQ8NHC6 308 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 FAM76AQ8TAV0 307 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 EFHD2Q96C19 240 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 SLC35A4Q96G79 324 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 TRIB1Q96RU8 372 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 STMN4Q9H169 189 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 KCNN3Q9UGI6 736 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 EXO1Q9UQ84 846 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 OR10H1Q9Y4A9 318 aa14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 ANKHD1Q8IWZ3 2542 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-205ENST00000472524 AZIN1O14977 448 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 ABCB7O75027 752 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 EPPINO95925 133 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 CD1EP15812 388 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 BMP5P22003 454 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 TCEA1P23193 301 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 GCKP35557 465 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 DLX5P56178 289 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 EFR3AQ14156 821 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 NHSL2Q5HYW2 709 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 LACC1Q8IV20 430 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 WDSUB1Q8N9V3 476 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 RELL2Q8NC24 303 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 NAXEQ8NCW5 288 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 GFM2Q969S9 779 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 WDYHV1Q96HA8 205 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 APOPT1Q96IL0 206 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 GATA5Q9BWX5 397 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 GLIPR2Q9H4G4 154 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 LRTM1Q9HBL6 345 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 CCL27Q9Y4X3 112 aa14.31□□□□□ -0.12
CCDC88B-205ENST00000472524 WIF1Q9Y5W5 379 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms