RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CELSR2Q9HCU4 2923 aa19.39■□□□□ 0.7
HMGB3-205ENST00000455596 PRAMEF25A6NGN4 478 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 FAM90A27PA6NNH2 459 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 SNPHO15079 494 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 FGF4P08620 206 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 LINC00032P0C843 101 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 GLI4P10075 376 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 TACR1P25103 407 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 PTPN6P29350 595 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 IL12BP29460 328 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 MC3RP41968 323 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 ZNF155Q12901 538 aaPredicted RBP19.39■□□□□ 0.69
HMGB3-205ENST00000455596 ARL13AQ5H913 290 aaPredicted RBP19.39■□□□□ 0.69
HMGB3-205ENST00000455596 TMEM107Q6UX40 140 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 NPSR1Q6W5P4 371 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 CCDC71Q8IV32 467 aaPredicted RBP19.39■□□□□ 0.69
HMGB3-205ENST00000455596 SLC44A2Q8IWA5 706 aaPredicted RBP19.39■□□□□ 0.69
HMGB3-205ENST00000455596 CLYBLQ8N0X4 340 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 TWIST2Q8WVJ9 160 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 FCRL1Q96LA6 429 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 CCT7Q99832 543 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 PARD6BQ9BYG5 372 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 GALNT9Q9HCQ5 603 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 TRAF6Q9Y4K3 522 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 PKDREJQ9NTG1 2253 aa19.39■□□□□ 0.69
HMGB3-205ENST00000455596 NKX2-6A6NCS4 301 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 C2orf72A6NCS6 295 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 FAM47E-STBD1D6RA91 191 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 PLOD2O00469 737 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 LSM1O15116 133 aaKnown RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 TSPAN2O60636 221 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 ZFP36L2P47974 494 aaKnown RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 RPL38P63173 70 aaKnown RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 CRYZQ08257 329 aaKnown RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 EFR3AQ14156 821 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 ZCCHC23Q6ZST2 131 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 DDIASQ8IXT1 998 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 ULK2Q8IYT8 1036 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 GFM2Q969S9 779 aaKnown RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 AMDHD1Q96NU7 426 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 ADOQ96SZ5 270 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 SPOCK3Q9BQ16 436 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 ENKD1Q9H0I2 346 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 KCNJ16Q9NPI9 418 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 DDX18Q9NVP1 670 aaKnown RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 C19orf53Q9UNZ5 99 aaPredicted RBP19.38■□□□□ 0.69
HMGB3-205ENST00000455596 MAPRE3Q9UPY8 281 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 TMED5Q9Y3A6 229 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 OR10H1Q9Y4A9 318 aa19.38■□□□□ 0.69
HMGB3-205ENST00000455596 AHRRA9YTQ3 701 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 CREB1P16220 341 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 SDC1P18827 310 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 SERPINB5P36952 375 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 PNLIPRP2P54317 469 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 PSG6Q00889 435 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 GALNTL6Q49A17 601 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 RFTN2Q52LD8 501 aaPredicted RBP19.37■□□□□ 0.69
HMGB3-205ENST00000455596 EIPR1Q53HC9 387 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 WIPI1Q5MNZ9 446 aaPredicted RBP19.37■□□□□ 0.69
HMGB3-205ENST00000455596 SH2D4BQ5SQS7 431 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 LARP4Q71RC2 724 aaKnown RBP eCLIP19.37■□□□□ 0.69
HMGB3-205ENST00000455596 PM20D2Q8IYS1 436 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 OR2L13Q8N349 312 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 AGR3Q8TD06 166 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 ELP4Q96EB1 424 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 ZNF764Q96H86 408 aaPredicted RBP19.37■□□□□ 0.69
HMGB3-205ENST00000455596 TIMP4Q99727 224 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 TRIM8Q9BZR9 551 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 UCK2Q9BZX2 261 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 SLC6A5Q9Y345 797 aa19.37■□□□□ 0.69
HMGB3-205ENST00000455596 A0A0G2JNJ9 132 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 TMEM233B4DJY2 109 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 UPK1AO00322 258 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 PDPK1O15530 556 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 CBR3O75828 277 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 IFI6P09912 130 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 MRPS22P82650 360 aaKnown RBP19.36■□□□□ 0.69
HMGB3-205ENST00000455596 UGT3A2Q3SY77 523 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 KRT71Q3SY84 523 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 NHSL2Q5HYW2 709 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 VASNQ6EMK4 673 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 MEX3BQ6ZN04 569 aaKnown RBP19.36■□□□□ 0.69
HMGB3-205ENST00000455596 ACBD4Q8NC06 268 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 FAM83FQ8NEG4 500 aaPredicted RBP19.36■□□□□ 0.69
HMGB3-205ENST00000455596 OR4N2Q8NGD1 307 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 DTNBP1Q96EV8 351 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 TSSK3Q96PN8 268 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 REEP4Q9H6H4 257 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 Q9UFV3 132 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 WIF1Q9Y5W5 379 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 ITPR2Q14571 2701 aa19.36■□□□□ 0.69
HMGB3-205ENST00000455596 CENPEQ02224 2701 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 PIP5K1BO14986 540 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 TYROBPO43914 113 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 TBX19O60806 448 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 TOXO94900 526 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 PSMG1O95456 288 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 BPGMP07738 259 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 BMP7P18075 431 aa19.35■□□□□ 0.69
HMGB3-205ENST00000455596 GCKP35557 465 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms