RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CCNYL2Q5T2Q4 361 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 MRM1Q6IN84 353 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 DGAT2L6Q6ZPD8 337 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 SLC29A4Q7RTT9 530 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 RIMKLAQ8IXN7 391 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 C9orf40Q8IXQ3 194 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 POU5F2Q8N7G0 328 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 GOLM1Q8NBJ4 401 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 CLHC1Q8NHS4 586 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 NUBPLQ8TB37 319 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 SLC22A8Q8TCC7 542 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 DOK4Q8TEW6 326 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 PHF10Q8WUB8 498 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 SPDL1Q96EA4 605 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 FBXL20Q96IG2 436 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 TEX37Q96LM6 180 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 COQ3Q9NZJ6 369 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 ASB4Q9Y574 426 aa16.61■□□□□ 0.25
SQSTM1-204ENST00000453046 A0A1W2PR48 441 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 WASHC1A8K0Z3 465 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 HRKO00198 91 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 SCAMP2O15127 329 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 IGKV3-11P04433 115 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 IL12AP29459 219 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 ZFP36L2P47974 494 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 NCALDP61601 193 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 STX5Q13190 355 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 NDUFAF5Q5TEU4 345 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 RNF111Q6ZNA4 994 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 MSANTD1Q6ZTZ1 278 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 C16orf78Q8WTQ4 265 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 CA5BP1Q8WTZ4 195 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 RIT1Q92963 219 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 ZNF764Q96H86 408 aaPredicted RBP16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 GAL3ST4Q96RP7 486 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 TTTY12Q9BZ98 90 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 BAIAP2L1Q9UHR4 511 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 ERVK-19Q9WJR5 959 aa16.6■□□□□ 0.25
SQSTM1-204ENST00000453046 A0A0G2JMM0 328 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 A0A1W2PP18 115 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 A0A1W2PPB8 328 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 A0A1W2PRS3 328 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 CCDC154A6NI56 674 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 ENO4A6NNW6 628 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 KIR3DP1A8MWS1 328 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 ANGPT2O15123 496 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 CFLARO15519 480 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 ZNF354AO60765 605 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 GUCY1B2O75343 617 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 AIFM1O95831 613 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 DDX5P17844 614 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 CAPN3P20807 821 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 PTGER4P35408 488 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 REP15Q6BDI9 236 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 TMEM211Q6ICI0 200 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 OR52E8Q6IFG1 317 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 FAM71E1Q6IPT2 247 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 R3HCC1LQ7Z5L2 792 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 CAMKMTQ7Z624 323 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 KRTCAP2Q8N6L1 136 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 CDC26Q8NHZ8 85 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 SDCCAG3Q96C92 435 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 MTERF3Q96E29 417 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 DMRTA2Q96SC8 542 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 LRMDAQ9H2I8 198 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 TP63Q9H3D4 680 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 NDUFAF1Q9Y375 327 aa16.59■□□□□ 0.25
SQSTM1-204ENST00000453046 LOC100653049A0A140TA62 436 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 C9JVG2 144 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 NPIPA2E9PIF3 369 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 NPIPA3F8WFD2 350 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 ADAM10O14672 748 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 KRT34O76011 436 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 IL6P05231 212 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 SLC35E2P0CK97 266 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 CCL3P10147 92 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 CPA2P48052 419 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 DNASE1L1P49184 302 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 PDE7AQ13946 482 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 CDSNQ15517 529 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 FAM174BQ3ZCQ3 159 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 TIGD2Q4W5G0 525 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 SLC22A10Q63ZE4 541 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 GDF7Q7Z4P5 450 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 SLC15A4Q8N697 577 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 RCN3Q96D15 328 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 EGLN2Q96KS0 407 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 FAIM2Q9BWQ8 316 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 C1orf21Q9H246 121 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 REEP4Q9H6H4 257 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 ZDHHC11Q9H8X9 412 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 IL1RL2Q9HB29 575 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 SLC52A3Q9NQ40 469 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 PLSCR2Q9NRY7 297 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 NDE1Q9NXR1 346 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 ATP6V1HQ9UI12 483 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 LEF1Q9UJU2 399 aaPredicted RBP16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 LRBAP50851 2863 aa16.58■□□□□ 0.24
SQSTM1-204ENST00000453046 NCOA6Q14686 2063 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms