RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 HTR3BO95264 441 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 GASTP01350 101 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 TFP02787 698 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 ACAA1P09110 424 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 CPN1P15169 458 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 NPR2P20594 1047 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 VEGFCP49767 419 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 SHC2P98077 582 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 MC2RQ01718 297 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 DYRK1AQ13627 763 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 DEFB115Q30KQ5 88 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 SBSNQ6UWP8 590 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 KRT78Q8N1N4 520 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 TOMM5Q8N4H5 51 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 NANPQ8TBE9 248 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 NARS2Q96I59 477 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 ACPTQ9BZG2 426 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 NMNAT1Q9HAN9 279 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 HMX1Q9NP08 348 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 TLR8Q9NR97 1041 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 MED11Q9P086 117 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 CA5BQ9Y2D0 317 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 YARS2Q9Y2Z4 477 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 PCDHB7Q9Y5E2 793 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 SMIM30A4D0T7 59 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 ZNF593O00488 134 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 EEF1E1O43324 174 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 TFPIP10646 304 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 GIFP27352 417 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 ZNF140P52738 457 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 RAB40BQ12829 278 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 C10orf120Q5SQS8 335 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 FUT10Q6P4F1 479 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 UQCC3Q6UW78 93 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 LYPD4Q6UWN0 246 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 GLYATL2Q8WU03 294 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 CNOT9Q92600 299 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 MRPL48Q96GC5 212 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 TSSK3Q96PN8 268 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 ARHGAP9Q9BRR9 750 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 POLDIP3Q9BY77 421 aaKnown RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 FAM126AQ9BYI3 521 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-205ENST00000447654 C11orf16Q9NQ32 467 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 SDHAF3Q9NRP4 125 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 RPS6KB2Q9UBS0 482 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 BTNL2Q9UIR0 455 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 ENPP4Q9Y6X5 453 aa18.11■□□□□ 0.49
HMGA1-205ENST00000447654 IGLV3-10A0A075B6K4 115 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 PMS2P1A4D2B8 440 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 GABRR3A8MPY1 467 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 GALR3O60755 368 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 GCM2O75603 506 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 EIF3GO75821 320 aaKnown RBP eCLIP18.1■□□□□ 0.497e-7■■□□□ 12.9
HMGA1-205ENST00000447654 TOXO94900 526 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 POU2F1P14859 743 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 SPI1P17947 270 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 WNT3P56703 355 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 ACSM1Q08AH1 577 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 HBMQ6B0K9 141 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 TSPAN33Q86UF1 283 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 TCEAL4Q96EI5 215 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 SCLYQ96I15 445 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 ZYG11BQ9C0D3 744 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 TINAGL1Q9GZM7 467 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 ZNF768Q9H5H4 540 aaKnown RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 PRDM9Q9NQV7 894 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 MARCH2Q9P0N8 246 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 OARD1Q9Y530 152 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 SERTM1A2A2V5 107 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 HEPACAM2A8MVW5 462 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 TAPBPO15533 448 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 NIPSNAP2O75323 286 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 KDM4BO94953 1096 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 PVALBP20472 110 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 MTNR1BP49286 362 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 SMSP52788 366 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 PTPN5P54829 565 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 RGNQ15493 299 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 CTSL3PQ5NE16 218 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 HAGHLQ6PII5 290 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 DNAJB7Q7Z6W7 309 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-205ENST00000447654 GANCQ8TET4 914 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 MS4A3Q96HJ5 214 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 TMEM248Q9NWD8 314 aa18.1■□□□□ 0.49
HMGA1-205ENST00000447654 A0A1B0GUH1 482 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 AGAP14A8MT82 685 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 OR2A4O95047 310 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 B3GALT4O96024 378 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 GALTP07902 379 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 SYPP08247 313 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 C1SP09871 688 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 RHOQP17081 205 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 CHI3L1P36222 383 aaPredicted RBP18.09■□□□□ 0.49
HMGA1-205ENST00000447654 ERVK-25P63136 954 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 C18orf21Q32NC0 220 aaPredicted RBP18.09■□□□□ 0.49
HMGA1-205ENST00000447654 ALKAL2Q6UX46 152 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 CEACAM20Q6UY09 585 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 MARCH9Q86YJ5 346 aa18.09■□□□□ 0.49
HMGA1-205ENST00000447654 ZNF687Q8N1G0 1237 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms