RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 DUSP22Q9NRW4 184 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 NDE1Q9NXR1 346 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 GPR83Q9NYM4 423 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 STMN3Q9NZ72 180 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 ABI3Q9P2A4 366 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 OR10H1Q9Y4A9 318 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 TO15178 435 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 ASNA1O43681 348 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 ITGA10O75578 1167 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 CEACAM4O75871 244 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 OR2J2O76002 312 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 OR12D1P0DN82 309 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 GPX2P18283 190 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 TRHRP34981 398 aaPredicted RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 SOX11P35716 441 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 MVDP53602 400 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 PSME3P61289 254 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 FADDQ13158 208 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 NNATQ16517 81 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 DUSP5Q16690 384 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 CYP27C1Q4G0S4 372 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 COX20Q5RI15 118 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.59□□□□□ -0.07
USP40-206ENST00000443711 ATAD3BQ5T9A4 648 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 B3GNTL1Q67FW5 361 aaPredicted RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 TNFAIP8L2Q6P589 184 aaPredicted RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 C16orf89Q6UX73 402 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 ISLR2Q6UXK2 745 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 NPSR1Q6W5P4 371 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 C16orf47Q6ZP98 133 aaPredicted RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 HORMAD2Q8N7B1 307 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 FBXO30Q8TB52 745 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 GPATCH1Q9BRR8 931 aaKnown RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 SLC39A3Q9BRY0 314 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 ZNF552Q9H707 407 aaPredicted RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 EXD2Q9NVH0 621 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 THUMPD1Q9NXG2 353 aaKnown RBP14.59□□□□□ -0.07
USP40-206ENST00000443711 AP3M1Q9Y2T2 418 aa14.59□□□□□ -0.07
USP40-206ENST00000443711 ATP5HO75947 161 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 SLC6A2P23975 617 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 SSR4P51571 173 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 MTPNP58546 118 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 POU6F2P78424 691 aaPredicted RBP14.58□□□□□ -0.08
USP40-206ENST00000443711 BNIP1Q12981 228 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 RAPSNQ13702 412 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 C8orf82Q6P1X6 216 aaPredicted RBP14.58□□□□□ -0.08
USP40-206ENST00000443711 OPN5Q6U736 354 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 GPR155Q7Z3F1 870 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 SLC34A3Q8N130 599 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 COX18Q8N8Q8 333 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 FDCSPQ8NFU4 85 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 OR5D16Q8NGK9 328 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 XAGE5Q8WWM1 108 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 CDS1Q92903 461 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 RAB8BQ92930 207 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 OTUB1Q96FW1 271 aaPredicted RBP14.58□□□□□ -0.08
USP40-206ENST00000443711 LMF1Q96S06 567 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 RASL10BQ96S79 203 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 ECSITQ9BQ95 431 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 BTBD2Q9BX70 525 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 IKZF5Q9H5V7 419 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 PRORYQ9H606 182 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 MRTO4Q9UKD2 239 aaKnown RBP14.58□□□□□ -0.08
USP40-206ENST00000443711 CBLCQ9ULV8 474 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 NPFFR2Q9Y5X5 522 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 CPAMD8Q8IZJ3 1885 aa14.58□□□□□ -0.08
USP40-206ENST00000443711 MAP1BP46821 2468 aaKnown RBP14.57□□□□□ -0.08
USP40-206ENST00000443711 GXYLT2A0PJZ3 443 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 A8MVJ9 347 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 MKRN2OSH3BPM6 223 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 HMGN4O00479 90 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 CDK2AP1O14519 115 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 MAN1A2O60476 641 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 HNRNPCL1O60812 293 aaKnown RBP14.57□□□□□ -0.08
USP40-206ENST00000443711 NADKO95544 446 aaPredicted RBP14.57□□□□□ -0.08
USP40-206ENST00000443711 AK1P00568 194 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 ALPPP05187 535 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 BMP2P12643 396 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 ETFAP13804 333 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 NAGAP17050 411 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 KRT20P35900 424 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 PIGAP37287 484 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 DSTNP60981 165 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 MRPS22P82650 360 aaKnown RBP14.57□□□□□ -0.08
USP40-206ENST00000443711 SLC25A3Q00325 362 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 PLCXD2Q0VAA5 305 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 MFAP5Q13361 173 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 SELPLGQ14242 412 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 DECR1Q16698 335 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 RABL3Q5HYI8 236 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 LINC00696Q6ZRV3 163 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 C16orf62Q7Z3J2 963 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 PGAM4Q8N0Y7 254 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 TMEM156Q8N614 296 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 FBXO27Q8NI29 283 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 ASB15Q8WXK1 588 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 PIK3R3Q92569 461 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 EXTL1Q92935 676 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 TMEM125Q96AQ2 219 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 RMND5BQ96G75 393 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms