RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 YARS2Q9Y2Z4 477 aaKnown RBP8.9□□□□□ -0.99
CUX1-206ENST00000437600 FANCMQ8IYD8 2048 aa8.9□□□□□ -0.99
CUX1-206ENST00000437600 NPIPA5A0A0B4J1W7 369 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 NPIPA7E9PJI5 369 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 RGS5O15539 181 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 KIAA0513O60268 411 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 NPIPA8P0DM63 369 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ERGP11308 486 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 FUT1P19526 365 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 HNRNPA2B1P22626 353 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 RPL3P39023 403 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 XKP51811 444 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 HMGA2P52926 109 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 REEP5Q00765 189 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 AGERQ15109 404 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 KCNJ8Q15842 424 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ABHD17CQ6PCB6 329 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ZC3H14Q6PJT7 736 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 ZNF438Q7Z4V0 828 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 SLC22A18ASQ8N1D0 253 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 OR4K5Q8NGD3 323 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 IPCEF1Q8WWN9 437 aaPredicted RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 MTERF3Q96E29 417 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 TRMT61AQ96FX7 289 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 SLC35G5Q96KT7 338 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 SPOCK3Q9BQ16 436 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 TIMM29Q9BSF4 260 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 FNDC11Q9BVV2 318 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 SPATA9Q9BWV2 254 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 CDADC1Q9BWV3 514 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 UCK2Q9BZX2 261 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 DDX31Q9H8H2 851 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 TBC1D17Q9HA65 648 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 SIAEQ9HAT2 523 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 CCNB1IP1Q9NPC3 277 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 WASH6PQ9NQA3 447 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 FTSJ1Q9UET6 329 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 CACNA1HO95180 2353 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 EML5Q05BV3 1969 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 A0A0A6YYD5 115 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 CENPVL1A0A0U1RR11 272 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 GSAPA4D1B5 854 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ARHGAP33O14559 1287 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 LDB3O75112 727 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 B3GALNT1O75752 331 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 POLR2CP19387 275 aaPredicted RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 ATP5A1P25705 553 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 GRK3P35626 688 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 HNRNPFP52597 415 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 ALDH6A1Q02252 535 aaKnown RBP8.89□□□□□ -0.99
CUX1-206ENST00000437600 ZNF846Q147U1 533 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 NFATC4Q14934 902 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ALG11Q2TAA5 492 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 OR2G6Q5TZ20 316 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 UBE2UQ5VVX9 321 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 PGBD2Q6P3X8 592 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ZNF354BQ96LW1 612 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 WDR92Q96MX6 357 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ERVK13-1Q9NX77 482 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 MAPRE3Q9UPY8 281 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 ASB4Q9Y574 426 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 NOX1Q9Y5S8 564 aa8.89□□□□□ -0.99
CUX1-206ENST00000437600 LOC105369274A0A096LPK9 316 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 LOC102723532A0A0G2JNH3 316 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 ZAR1LA6NP61 321 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 KPNA4O00629 521 aaPredicted RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 PRKNO60260 465 aaPredicted RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 GPX5O75715 221 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 CTSBP07858 339 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 TCEA1P23193 301 aaKnown RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 PKLRP30613 574 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 TRHRP34981 398 aaPredicted RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 PPP1CAP62136 330 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 MRPS21P82921 87 aaKnown RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 GINS1Q14691 196 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 SSX1Q16384 188 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 ZNF404Q494X3 552 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 LIPKQ5VXJ0 399 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 IKBIPQ70UQ0 350 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 PRICKLE2Q7Z3G6 844 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 SLC46A3Q7Z3Q1 461 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 OR4N4Q8N0Y3 316 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 ZNF687Q8N1G0 1237 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 TBC1D19Q8N5T2 526 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 SLC6A18Q96N87 628 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 PALMDQ9NP74 551 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 FBXO34Q9NWN3 711 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 CLN6Q9NWW5 311 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 ZNF229Q9UJW7 825 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 OSGIN1Q9UJX0 560 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 CEP192Q8TEP8 1941 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 CACNA1CQ13936 2221 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 LRRC72A6NJI9 287 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 SSX4O60224 188 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 UGT2B17O75795 530 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 ZNF888P0CJ79 500 aaPredicted RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 ALOX12P18054 663 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 SRP54P61011 504 aaKnown RBP8.88□□□□□ -0.99
CUX1-206ENST00000437600 ARHGAP19Q14CB8 494 aa8.88□□□□□ -0.99
CUX1-206ENST00000437600 TRMT12Q53H54 448 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms