RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF773Q6PK81 442 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 TMEM151BQ8IW70 566 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 AQP11Q8NBQ7 271 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 AGBL5Q8NDL9 886 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ZFAND2BQ8WV99 257 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 OSTF1Q92882 214 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 RFKQ969G6 155 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 MPP4Q96JB8 637 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 PSD2Q9BQI7 771 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 SMURF2Q9HAU4 748 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 FGF21Q9NSA1 209 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 GPATCH2Q9NW75 528 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 NDUFAF4Q9P032 175 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 PILRBQ9UKJ0 227 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 LYVE1Q9Y5Y7 322 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 COMMD3-BMI1R4GMX3 469 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 TRAPPC13A5PLN9 417 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 WASHC1A8K0Z3 465 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 BRINP1O60477 761 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 RCBTB2O95199 551 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 LDOC1O95751 146 aaPredicted RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 LGI1O95970 557 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 STAT5AP42229 794 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 TMED10P49755 219 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 PGDP52209 483 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 VLDLRP98155 873 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 DUSP8Q13202 625 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ELAVL1Q15717 326 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 TIMM50Q3ZCQ8 353 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 KDM4DQ6B0I6 523 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 QSOX2Q6ZRP7 698 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 PTCHD4Q6ZW05 846 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 PPP1R3BQ86XI6 285 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 SLC35F3Q8IY50 421 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 CHDHQ8NE62 594 aaPredicted RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 ZC3H10Q96K80 434 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 ZNF681Q96N22 645 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 IRF2BPLQ9H1B7 796 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ZNF768Q9H5H4 540 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 FTSJ1Q9UET6 329 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ABCG2Q9UNQ0 655 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ZNF443Q9Y2A4 671 aaPredicted RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 C7orf72A4D263 438 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 FAM86C2PA6NEL3 165 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ARHGAP33O14559 1287 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ACOX3O15254 700 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 PPM1BO75688 479 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 IFNGP01579 166 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 RPLP0P05388 317 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 IDH2P48735 452 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 TARDBPQ13148 414 aaKnown RBP eCLIP7.85□□□□□ -1.15
USP54-203ENST00000418501 SYPL1Q16563 259 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ZNF628Q5EBL2 1059 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 TMEM164Q5U3C3 297 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 FAM219BQ5XKK7 198 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 GALNT5Q7Z7M9 940 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 OR4N5Q8IXE1 308 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ZNF540Q8NDQ6 660 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 OR52R1Q8NGF1 315 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 OR52J3Q8NH60 311 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 NODALQ96S42 347 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 SDHAF3Q9NRP4 125 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 TMEM9Q9P0T7 183 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 BAIAP2Q9UQB8 552 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 RPL36Q9Y3U8 105 aaKnown RBP7.85□□□□□ -1.15
USP54-203ENST00000418501 PCDHGB2Q9Y5G2 931 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 A0A1W2PRQ8 180 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 A8MU76 341 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 UPK1AO00322 258 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 OSMP13725 252 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 SLC6A8P48029 635 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 GPR143P51810 404 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 HMGA2P52926 109 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ID2Q02363 134 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 DGCR6Q14129 220 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 EFR3AQ14156 821 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 MPEG1Q2M385 716 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 PROX2Q3B8N5 592 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 C6orf141Q5SZD1 244 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 C1QTNF12Q5T7M4 302 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 GPR155Q7Z3F1 870 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 BPIFB6Q8NFQ5 453 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 FAM81AQ8TBF8 368 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 CRELD1Q96HD1 420 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 SLC41A2Q96JW4 573 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 ZNF285Q96NJ3 590 aa7.85□□□□□ -1.15
USP54-203ENST00000418501 FLRT2O43155 660 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 FGF17O60258 216 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 PCDHGA12O60330 932 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 ABCB7O75027 752 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 LDB3O75112 727 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 ZNF883P0CG24 379 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 PAICSP22234 425 aaKnown RBP7.84□□□□□ -1.15
USP54-203ENST00000418501 OR1E2P47887 323 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 CRISP1P54107 249 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 EEF1A2Q05639 463 aaKnown RBP7.84□□□□□ -1.15
USP54-203ENST00000418501 SLC14A1Q13336 389 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 KLHL22Q53GT1 634 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 MMP21Q8N119 569 aa7.84□□□□□ -1.15
USP54-203ENST00000418501 EID2Q8N6I1 236 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms