RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ALOX15P16050 662 aaPredicted RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 CD53P19397 219 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 HOXC12P31275 282 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 GYS2P54840 703 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 FOXA1P55317 472 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 SLC37A1P57057 533 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 TNFRSF17Q02223 184 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 IFT88Q13099 833 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 KEAP1Q14145 624 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 AP5B1Q2VPB7 878 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 WIPI1Q5MNZ9 446 aaPredicted RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 KHDRBS2Q5VWX1 349 aaKnown RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 FBXW10Q5XX13 1052 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 KANK2Q63ZY3 851 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 FRG2Q64ET8 278 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 ZNF781Q8N8C0 355 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 ZNF441Q8N8Z8 693 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 PIWIL2Q8TC59 973 aaKnown RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 SELENOMQ8WWX9 145 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 DIO2Q92813 273 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 RILPQ96NA2 401 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 FRG2BQ96QU4 278 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 MDFIQ99750 246 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 UGT2B28Q9BY64 529 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 UBQLN3Q9H347 655 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 ELOVL6Q9H5J4 265 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 RPF2Q9H7B2 306 aaKnown RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 PNPOQ9NVS9 261 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 TEX10Q9NXF1 929 aaPredicted RBP11.78□□□□□ -0.52
LINC00339-202ENST00000416769 CAMK2AQ9UQM7 478 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 DTX4Q9Y2E6 619 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 ZANQ9Y493 2812 aa11.78□□□□□ -0.52
LINC00339-202ENST00000416769 A0A1W2PR48 441 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 CLCA1A8K7I4 914 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 GNB5O14775 395 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 EDF1O60869 148 aaKnown RBP11.77□□□□□ -0.53
LINC00339-202ENST00000416769 PDYNP01213 254 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 HRGP04196 525 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 EPXP11678 715 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 HSD3B1P14060 373 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 COX7A2P14406 83 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 FOSL1P15407 271 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 BMP7P18075 431 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 HSD3B2P26439 372 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 SERPINB3P29508 390 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 CDK9P50750 372 aaKnown RBP11.77□□□□□ -0.53
LINC00339-202ENST00000416769 DCAF7P61962 342 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 PHEXP78562 749 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 PLIN5Q00G26 463 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 TGM3Q08188 693 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 NNATQ16517 81 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 NTRK2Q16620 822 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 CLEC6AQ6EIG7 209 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 OR4C11Q6IEV9 310 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 RNF111Q6ZNA4 994 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 YRDCQ86U90 279 aaKnown RBP11.77□□□□□ -0.53
LINC00339-202ENST00000416769 CXorf67Q86X51 503 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-202ENST00000416769 SIMC1Q8NDZ2 872 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 HUS1BQ8NHY5 278 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 ARSGQ96EG1 525 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 WDYHV1Q96HA8 205 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 C18orf12Q96KH6 178 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 ZNF597Q96LX8 424 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 KCNA7Q96RP8 456 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 MTERF1Q99551 399 aaKnown RBP11.77□□□□□ -0.53
LINC00339-202ENST00000416769 CCT7Q99832 543 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 PRDM14Q9GZV8 571 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 BRF2Q9HAW0 419 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 SLCO1B3Q9NPD5 702 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 PFDN4Q9NQP4 134 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 C15orf41Q9Y2V0 281 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 DNAJC15Q9Y5T4 150 aa11.77□□□□□ -0.53
LINC00339-202ENST00000416769 AHRRA9YTQ3 701 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 SIAH2O43255 324 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 TGDSO95455 350 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 AIFM1O95831 613 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 LY6G6DO95868 133 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 INHBBP09529 407 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 PTX3P26022 381 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-202ENST00000416769 TIMP3P35625 211 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 NEK2P51955 445 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 RPS13P62277 151 aaKnown RBP11.76□□□□□ -0.53
LINC00339-202ENST00000416769 DEPDC1Q5TB30 811 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 NSUN5P2Q63ZY6 315 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 VASNQ6EMK4 673 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 CLEC9AQ6UXN8 241 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 TRIM46Q7Z4K8 759 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 LUZP2Q86TE4 346 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 BIVMQ86UB2 503 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 GPR180Q86V85 440 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 LACC1Q8IV20 430 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 GBP7Q8N8V2 638 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-202ENST00000416769 SPPL2AQ8TCT8 520 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 CMTM7Q96FZ5 175 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 RBM18Q96H35 190 aaKnown RBP11.76□□□□□ -0.53
LINC00339-202ENST00000416769 ZNF317Q96PQ6 595 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-202ENST00000416769 FARSBQ9NSD9 589 aaKnown RBP11.76□□□□□ -0.53
LINC00339-202ENST00000416769 NMRK1Q9NWW6 199 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 CNIH4Q9P003 139 aa11.76□□□□□ -0.53
LINC00339-202ENST00000416769 JKAMPQ9P055 326 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms