RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ALDH6A1Q02252 535 aaKnown RBP18.82■□□□□ 0.6
USP39-204ENST00000409766 MOGQ16653 247 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 C1orf94Q6P1W5 598 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 STX19Q8N4C7 294 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 OR52P1PQ8NH57 321 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 PRR14Q9BWN1 585 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 STARD5Q9NSY2 213 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 MKLN1Q9UL63 735 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.82■□□□□ 0.6
USP39-204ENST00000409766 CA14Q9ULX7 337 aa18.82■□□□□ 0.6
USP39-204ENST00000409766 CD36P16671 472 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 SHC2P98077 582 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 IRF3Q14653 427 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 DUSP5Q16690 384 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 NDUFA9Q16795 377 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 ARHGAP11BQ3KRB8 267 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 ARMC6Q6NXE6 501 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 IQCHQ86VS3 1027 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 CA13Q8N1Q1 262 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 NR4A3Q92570 626 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 CCDC3Q9BQI4 270 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 MTHFD2LQ9H903 347 aaPredicted RBP18.81■□□□□ 0.6
USP39-204ENST00000409766 CNOT2Q9NZN8 540 aaKnown RBP18.81■□□□□ 0.6
USP39-204ENST00000409766 SLC13A4Q9UKG4 626 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 CLDN24A6NM45 220 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 M0R082 166 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 FRS3O43559 492 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 GPR75O95800 540 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 ACP2P11117 423 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 LIPAP38571 399 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 SLC15A1P46059 708 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 FZD5Q13467 585 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 EXOSC6Q5RKV6 272 aaKnown RBP18.81■□□□□ 0.6
USP39-204ENST00000409766 TYW3Q6IPR3 259 aaKnown RBP18.81■□□□□ 0.6
USP39-204ENST00000409766 CLIP4Q8N3C7 705 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 ARHGEF39Q8N4T4 335 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 TRUB1Q8WWH5 349 aaKnown RBP18.81■□□□□ 0.6
USP39-204ENST00000409766 SLC38A4Q969I6 547 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 IL4I1Q96RQ9 567 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 GPA33Q99795 319 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 SLC25A19Q9HC21 320 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 TRIOBPQ9H2D6 2365 aa18.81■□□□□ 0.6
USP39-204ENST00000409766 A0A087WV62 115 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 A0A1W2PPC1 479 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 KRBA1A5PL33 1030 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 EFCAB10A6NFE3 127 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 WNT1P04628 370 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 TAS2R41P59536 307 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 VBP1P61758 197 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 ZNF829Q3KNS6 432 aaPredicted RBP18.8■□□□□ 0.6
USP39-204ENST00000409766 TMEM201Q5SNT2 666 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 ZBTB46Q86UZ6 589 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 CROCCP3Q8IVE0 287 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 NDNFQ8TB73 568 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 DIO2Q92813 273 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 WDR45Q9Y484 360 aa18.8■□□□□ 0.6
USP39-204ENST00000409766 A0A087WUU8 490 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 SGK494L7N484 410 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 PLOD3O60568 738 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 ENTPD6O75354 484 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CYP7B1O75881 506 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CSF2P04141 144 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CTSBP07858 339 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 ADORA3P0DMS8 318 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 TNNI3P19429 210 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 MAZP56270 477 aaKnown RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 LSM3P62310 102 aaKnown RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 CCDC85BQ15834 202 aaPredicted RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 TIGD6Q17RP2 521 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 PUS10Q3MIT2 529 aaKnown RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 ENTPD8Q5MY95 495 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 GJD3Q8N144 294 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 ZNF675Q8TD23 568 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 SDF2Q99470 211 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CDCA4Q9BXL8 241 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CHRDQ9H2X0 955 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 PIGUQ9H490 435 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 TRIM45Q9H8W5 580 aaPredicted RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 KLHL28Q9NXS3 571 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 IFT52Q9Y366 437 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CD27P26842 260 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 TRHRP34981 398 aaPredicted RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 BMXP51813 675 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 OCA2Q04671 838 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 SYT16Q17RD7 645 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 PRICKLE4Q2TBC4 344 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 DEFB110Q30KQ9 67 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 CASP12Q6UXS9 341 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 DEFB119Q8N690 84 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 C19orf47Q8N9M1 422 aaKnown RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 DOK4Q8TEW6 326 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 SEMA4GQ9NTN9 838 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 COLQQ9Y215 455 aaPredicted RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 ZNF443Q9Y2A4 671 aaPredicted RBP18.79■□□□□ 0.6
USP39-204ENST00000409766 TMEM131Q92545 1883 aa18.79■□□□□ 0.6
USP39-204ENST00000409766 A0A1W2PR77 199 aa18.78■□□□□ 0.6
USP39-204ENST00000409766 CPSF4LA6NMK7 179 aaKnown RBP18.78■□□□□ 0.6
USP39-204ENST00000409766 SOX1O00570 391 aaPredicted RBP18.78■□□□□ 0.6
USP39-204ENST00000409766 UBXN7O94888 489 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms