RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PCBP4P57723 403 aaKnown RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 HBA1P69905 142 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 BTG2P78543 158 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 LSAMPQ13449 338 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 DNASE1L3Q13609 305 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 ZIK1Q3SY52 487 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MINDY4Q4G0A6 757 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MFSD4BQ5TF39 518 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 FAM69BQ5VUD6 431 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 SLC30A8Q8IWU4 369 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF595Q8IYB9 648 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 TANKQ92844 425 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 HSH2DQ96JZ2 352 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MUS81Q96NY9 551 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MBOAT4Q96T53 435 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 SPSB2Q99619 263 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 TMEM38AQ9H6F2 299 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 CCDC86Q9H6F5 360 aaKnown RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 SMURF2Q9HAU4 748 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 C14orf105Q9NVL8 296 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 TAS2R9Q9NYW1 312 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 NXT1Q9UKK6 140 aaKnown RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MKL2Q9ULH7 1088 aa12.54□□□□□ -0.4
LIMS1-204ENST00000409441 FAF1Q9UNN5 650 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MRPS33Q9Y291 106 aaKnown RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 MAGED1Q9Y5V3 778 aaPredicted RBP12.54□□□□□ -0.4
LIMS1-204ENST00000409441 CEP295Q9C0D2 2601 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 BLACEA4D250 179 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 CCDC160A6NGH7 325 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 TERTO14746 1132 aaKnown RBP12.53□□□□□ -0.4
LIMS1-204ENST00000409441 SLC16A6O15403 523 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 TLX3O43711 291 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-204ENST00000409441 HS6ST1O60243 411 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 CTNSO60931 367 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 TNFRSF21O75509 655 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 CLIC3O95833 236 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 C6orf47O95873 294 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 C1QCP02747 245 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 FPR1P21462 350 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 DNAJA1P31689 397 aaKnown RBP12.53□□□□□ -0.4
LIMS1-204ENST00000409441 EMP2P54851 167 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 CDH15P55291 814 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 HSD17B7P56937 341 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 SLC13A2Q13183 592 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 TOP3AQ13472 1001 aaPredicted RBP12.53□□□□□ -0.4
LIMS1-204ENST00000409441 GCNT6Q5T4J0 391 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 CCDC80Q76M96 950 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 TMEM179BQ7Z7N9 219 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 HDAC2Q92769 488 aaKnown RBP12.53□□□□□ -0.4
LIMS1-204ENST00000409441 SLC35A5Q9BS91 424 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 FAM117AQ9C073 453 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 ING2Q9H160 280 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 MIEF1Q9NQG6 463 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 PRTFDC1Q9NRG1 225 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 DKK4Q9UBT3 224 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 KCND3Q9UK17 655 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 TCFL5Q9UL49 500 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 PADI2Q9Y2J8 665 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 PTRH2Q9Y3E5 179 aaKnown RBP12.53□□□□□ -0.4
LIMS1-204ENST00000409441 WDFY3Q8IZQ1 3526 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 NCOR2Q9Y618 2525 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 FER1L5A0AVI2 2057 aa12.53□□□□□ -0.4
LIMS1-204ENST00000409441 A0A1W2PRB8 838 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 IDSB3KWA1 339 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF701M0R085 212 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 SUV39H1O43463 412 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 LDB3O75112 727 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 RECKO95980 971 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 HEXBP07686 556 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 CDH2P19022 906 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 DDCP20711 480 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 EFNA1P20827 205 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 MAOAP21397 527 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 CDK9P50750 372 aaKnown RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 MVDP53602 400 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 GABARAPL2P60520 117 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 CLN3Q13286 438 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 MPEG1Q2M385 716 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 ZBED5Q49AG3 693 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 SLC48A1Q6P1K1 146 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 GPR141Q7Z602 305 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 OR4N5Q8IXE1 308 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 ZNF248Q8NDW4 579 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 OR2Y1Q8NGV0 311 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 KIAA1143Q96AT1 154 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 NMD3Q96D46 503 aaKnown RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 PTCHD1Q96NR3 888 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 VN1R1Q9GZP7 353 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 GPN2Q9H9Y4 310 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 PRDM9Q9NQV7 894 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 C5AR2Q9P296 337 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 RSL24D1Q9UHA3 163 aaKnown RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 IL17BQ9UHF5 180 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 TMEFF2Q9UIK5 374 aaPredicted RBP12.52□□□□□ -0.4
LIMS1-204ENST00000409441 CES1P1Q9UKY3 287 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 PSME2Q9UL46 239 aa12.52□□□□□ -0.4
LIMS1-204ENST00000409441 GPR75O95800 540 aa12.51□□□□□ -0.41
LIMS1-204ENST00000409441 UQCRC2P22695 453 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms