RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZFP82Q8N141 532 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 RBPMSQ93062 196 aaKnown RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 INPP5KQ9BT40 448 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 GKN1Q9NS71 199 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SLC7A11Q9UPY5 501 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 POLHQ9Y253 713 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 RPL17P18621 184 aaKnown RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SLC2A5P22732 501 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ACTR1BP42025 376 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SNU13P55769 128 aaKnown RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 FXYD4P59646 89 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ACTR1AP61163 376 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 RCAN2Q14206 197 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 PAGE3Q5JUK9 113 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 B3GNT8Q7Z7M8 397 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 OR4K17Q8NGC6 315 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SPRYD4Q8WW59 207 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 DPF3Q92784 378 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 RIMS3Q9UJD0 308 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF736B4DX44 427 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 PRSS44E7EML9 344 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SHOXO15266 292 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 IL13RA1P78552 427 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 HTRA4P83105 476 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 MAP2K5Q13163 448 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 KCNC3Q14003 757 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 TCEAL1Q15170 157 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF691Q5VV52 312 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 CGB2Q6NT52 195 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ENTHD1Q8IYW4 607 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 OR4K13Q8NH42 304 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 HCAR2Q8TDS4 363 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ST8SIA2Q92186 375 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 TMEM125Q96AQ2 219 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 UHRF1Q96T88 793 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 FZD8Q9H461 694 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 FN3KQ9H479 309 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF442Q9H7R0 627 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 A8MXE2 369 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 PIGRP01833 764 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SORDQ00796 357 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 MBTPS1Q14703 1052 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 DUSP28Q4G0W2 176 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 STEAP3Q658P3 488 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 TIGD3Q6B0B8 471 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ENPP7Q6UWV6 458 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 RASGRP3Q8IV61 690 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 KCTD13Q8WZ19 329 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SLC28A3Q9HAS3 691 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 FNIP2Q9P278 1114 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 KLHL21Q9UJP4 597 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 DIP2BQ9P265 1576 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 EIF2DP41214 584 aaKnown RBP11.27□□□□□ -0.6
SYNPO-202ENST00000394243 HNRNPKP61978 463 aaKnown RBP eCLIP11.27□□□□□ -0.6
SYNPO-202ENST00000394243 HYAL4Q2M3T9 481 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 C15orf52Q6ZUT6 534 aaKnown RBP11.27□□□□□ -0.6
SYNPO-202ENST00000394243 DCUN1D3Q8IWE4 304 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 ADGRG5Q8IZF4 528 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 ZDHHC14Q8IZN3 488 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 OR4E2Q8NGC2 313 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 OR4K14Q8NGD5 310 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 CNTNAP3Q9BZ76 1288 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 FABP7O15540 132 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 VEGFCP49767 419 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 NDUFA6P56556 154 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 ZXDBP98169 803 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF33BQ06732 778 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 BCO2Q9BYV7 579 aa11.27□□□□□ -0.6
SYNPO-202ENST00000394243 PUS1Q9Y606 427 aaKnown RBP eCLIP11.27□□□□□ -0.6
SYNPO-202ENST00000394243 CLTCQ00610 1675 aaKnown RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 AFDNP55196 1824 aaKnown RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 JRKO75564 520 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 FBXO45P0C2W1 286 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 GGT2P36268 569 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 MLLT3P42568 568 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 TDGQ13569 410 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SGCAQ16586 387 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ADGRF1Q5T601 910 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 METTL2BQ6P1Q9 378 aaKnown RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SLC22A25Q6T423 547 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM107Q6UX40 140 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 CEP68Q76N32 757 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 DPPA2Q7Z7J5 298 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 OR10K1Q8NGX5 313 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ZBTB8AQ96BR9 441 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 KCNK13Q9HB14 408 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ATXN7L1Q9ULK2 861 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 FBXO24O75426 580 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 JUPP14923 745 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 UBE2KP61086 200 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 RAP2BP61225 183 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF33AQ06730 810 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 MS4A13Q5J8X5 152 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 SGPP2Q8IWX5 399 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 OR4K5Q8NGD3 323 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 CYB5D2Q8WUJ1 264 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 FOXRED1Q96CU9 486 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-202ENST00000394243 PGAM5Q96HS1 289 aa11.27□□□□□ -0.61
SYNPO-202ENST00000394243 FCRL1Q96LA6 429 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms