RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 C8orf59Q8N0T1 100 aaPredicted RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 MMP21Q8N119 569 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 ACOT4Q8N9L9 421 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 ADAMTS16Q8TE57 1224 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 TMIGD2Q96BF3 282 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 TPD52L3Q96J77 140 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 AICDAQ9GZX7 198 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 RAD21L1Q9H4I0 556 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 AKIRIN1Q9H9L7 192 aaPredicted RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 PTTG2Q9NZH5 202 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 TMEFF2Q9UIK5 374 aaPredicted RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 DAPP1Q9UN19 280 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 MRPS2Q9Y399 296 aaKnown RBP9.53□□□□□ -0.88
VPS53-202ENST00000389040 MAU2Q9Y6X3 613 aa9.53□□□□□ -0.88
VPS53-202ENST00000389040 A0A1W2PQ72 361 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 MYO1GB0I1T2 1018 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 H3BSA7 217 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 K7ENP7 123 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 CHST10O43529 356 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 TBX19O60806 448 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 KRT75O95678 551 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 FHP07954 510 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 CDH2P19022 906 aaPredicted RBP9.52□□□□□ -0.88
VPS53-202ENST00000389040 MMP11P24347 488 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 PPP2R1BP30154 601 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 DNAJA1P31689 397 aaKnown RBP9.52□□□□□ -0.88
VPS53-202ENST00000389040 SOAT1P35610 550 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 HLCSP50747 726 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 RAD23AP54725 363 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 CASP9P55211 416 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 TPD52P55327 224 aaPredicted RBP9.52□□□□□ -0.88
VPS53-202ENST00000389040 SH3BGRP55822 239 aaPredicted RBP9.52□□□□□ -0.88
VPS53-202ENST00000389040 HSD17B7P56937 341 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 RAB38P57729 211 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 ESRRGP62508 458 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 RBBP4Q09028 425 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 KCNAB2Q13303 367 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 HEPACAMQ14CZ8 416 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 INO80CQ6PI98 192 aaPredicted RBP9.52□□□□□ -0.88
VPS53-202ENST00000389040 B3GNT6Q6ZMB0 384 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 RNF130Q86XS8 419 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 RAB43Q86YS6 212 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 ZNF595Q8IYB9 648 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 PLPP5Q8NEB5 264 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 OR5AK3PQ8NH89 298 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 ZFAND2BQ8WV99 257 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 TANKQ92844 425 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 TM4SF18Q96CE8 201 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 SPSB2Q99619 263 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 DOHHQ9BU89 302 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 TMEM38AQ9H6F2 299 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 MMACHCQ9Y4U1 282 aa9.52□□□□□ -0.88
VPS53-202ENST00000389040 ASPMQ8IZT6 3477 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 HEATR5BQ9P2D3 2071 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 A0A0A6YYD5 115 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 DPM1O60762 260 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 RDH16O75452 317 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 GCM2O75603 506 aaPredicted RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 DIRAS1O95057 198 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 DDX5P17844 614 aaKnown RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 FPR1P21462 350 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 UQCRC2P22695 453 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 IGFBP5P24593 272 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 ELK4P28324 431 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 BUD31P41223 144 aaPredicted RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 XCR1P46094 333 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 PRIM2P49643 509 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 LIM2P55344 173 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 KCNJ10P78508 379 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 SCARB2Q14108 478 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 KIF26BQ2KJY2 2108 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 MRM1Q6IN84 353 aaKnown RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 LCN10Q6JVE6 187 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 QSOX2Q6ZRP7 698 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 GPR141Q7Z602 305 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 NATD1Q8N6N6 113 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 NRBF2Q96F24 287 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 C7orf34Q96L11 122 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 DCBLD2Q96PD2 775 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 BARD1Q99728 777 aaKnown RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 REEP1Q9H902 201 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 VCX3AQ9NNX9 186 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 KCMF1Q9P0J7 381 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 RSL24D1Q9UHA3 163 aaKnown RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 ZMIZ1Q9ULJ6 1067 aa9.52□□□□□ -0.89
VPS53-202ENST00000389040 PTRH2Q9Y3E5 179 aaKnown RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 SAMHD1Q9Y3Z3 626 aaKnown RBP9.52□□□□□ -0.89
VPS53-202ENST00000389040 AKAP13Q12802 2813 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 LOC100130705A0A1B0GUX0 176 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 TMEM229AB2RXF0 380 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 CYR61O00622 381 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 SLC16A6O15403 523 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 PDPK1O15530 556 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 EFSO43281 561 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 STATHP02808 62 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 ITGAMP11215 1152 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 F8A1P23610 371 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 YAP1P46937 504 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 ALDH9A1P49189 494 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 EMP2P54851 167 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms