RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 IGHA2P01877 340 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 VBP1P61758 197 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 TNFRSF17Q02223 184 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 CDK5R2Q13319 367 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 LRIF1Q5T3J3 769 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 SHISA6Q6ZSJ9 500 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 KCTD7Q96MP8 289 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ELL3Q9HB65 397 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZFR2Q9UPR6 939 aaKnown RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 J3QLW9 94 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 PEX12O00623 359 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 B4GAT1O43505 415 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF19P17023 458 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 RAB14P61106 215 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 CSTF1Q05048 431 aaKnown RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 IL18Q14116 193 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.66□□□□□ -0.228e-7■■□□□ 13.2
TCOF1-202ENST00000377797 FAM86B1Q8N7N1 296 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 C7orf57Q8NEG2 295 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 OR52R1Q8NGF1 315 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 TBC1D20Q96BZ9 403 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 TCTN2Q96GX1 697 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 CNDP2Q96KP4 475 aaKnown RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 COMMD3Q9UBI1 195 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 HCN2Q9UL51 889 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 RCVRNP35243 200 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 POLR2IP36954 125 aaKnown RBP13.65□□□□□ -0.22
TCOF1-202ENST00000377797 OR1D4P47884 311 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 GPR143P51810 404 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 GAB1Q13480 694 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 DSG2Q14126 1118 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 FAM111BQ6SJ93 734 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 KRT74Q7RTS7 529 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 IQCF1Q8N6M8 205 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 AMDHD1Q96NU7 426 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 COQ7Q99807 217 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 ASPNQ9BXN1 380 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 NT5DC2Q9H857 520 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 SLC25A37Q9NYZ2 338 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 CNIH4Q9P003 139 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 ICKQ9UPZ9 632 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 OTOL1A6NHN0 477 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-202ENST00000377797 CHRNEQ04844 493 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 HTR4Q13639 388 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF750Q32MQ0 723 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 ZCCHC12Q6PEW1 402 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 MARCH9Q86YJ5 346 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 UXS1Q8NBZ7 420 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 HTRA1Q92743 480 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 A0A1B0GVT2 93 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 TFECO14948 347 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-202ENST00000377797 ALPLP05186 524 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 GLULP15104 373 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 DRD3P35462 400 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 LTB4RQ15722 352 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 EZH1Q92800 747 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-202ENST00000377797 GFM1Q96RP9 751 aaKnown RBP13.65□□□□□ -0.22
TCOF1-202ENST00000377797 STRADBQ9C0K7 418 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 GPR83Q9NYM4 423 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 CKLFQ9UBR5 152 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 VILLO15195 856 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 LCMT2O60294 686 aaKnown RBP13.65□□□□□ -0.22
TCOF1-202ENST00000377797 RAB36O95755 333 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 POU2F2P09086 479 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 ACPPP15309 386 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 PROX2Q3B8N5 592 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 MGLLQ99685 303 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 KLHL31Q9H511 634 aa13.65□□□□□ -0.22
TCOF1-202ENST00000377797 J3KTA2 159 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SOX1O00570 391 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 PPM1BO75688 479 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 DCNP07585 359 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 GKN3PP0CG01 181 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 GABRG2P18507 467 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 RORCP51449 518 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 NR0B1P51843 470 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 MAT1AQ00266 395 aaKnown RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 DCST2Q5T1A1 773 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 LHFPL3Q86UP9 236 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 MCEMP1Q8IX19 187 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 MMP21Q8N119 569 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF619Q8N2I2 560 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TMEM234Q8WY98 164 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 MS4A6EQ96DS6 147 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 NEURL3Q96EH8 262 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 COX4I2Q96KJ9 171 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TMED9Q9BVK6 235 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 PTGES2Q9H7Z7 377 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 UBAP1Q9NZ09 502 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 A0A0G2JMZ2 1700 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SAGE2PA6NJ88 616 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 PCDH17O14917 1159 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 TRIM3O75382 744 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-202ENST00000377797 ZSWIM7Q19AV6 140 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 VRK2Q86Y07 508 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 OR2A1Q8NGT9 310 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 PIK3R3Q92569 461 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 RSC1A1Q92681 617 aa13.64□□□□□ -0.23
TCOF1-202ENST00000377797 SGTBQ96EQ0 304 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms