RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NDUFS4O43181 175 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 TSC22D2O75157 780 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 MYCP01106 439 aaPredicted RBP15.4■□□□□ 0.06
SDC4-201ENST00000372733 ELK1P19419 428 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 TM4SF4P48230 202 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 TAS2R41P59536 307 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 IL20RBQ6UXL0 311 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 MRGPREQ86SM8 312 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 LINC00471Q8N535 108 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 SPRYD4Q8WW59 207 aaPredicted RBP15.4■□□□□ 0.06
SDC4-201ENST00000372733 MKRN2Q9H000 416 aaKnown RBP15.4■□□□□ 0.06
SDC4-201ENST00000372733 HDHD2Q9H0R4 259 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 RHBGQ9H310 441 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 IL20RAQ9UHF4 553 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 CDH10Q9Y6N8 788 aa15.4■□□□□ 0.06
SDC4-201ENST00000372733 A0A1W2PQ72 361 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 H7BY64 318 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 SGK494L7N484 410 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 GTPBP1O00178 669 aaKnown RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 KIAA0355O15063 1070 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 CCL16O15467 120 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 ALDH1A1P00352 501 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 PAHP00439 452 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 HLA-DPB1P04440 258 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 SERPIND1P05546 499 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 RB1P06400 928 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 C8AP07357 584 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 PTNP21246 168 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 TRIM23P36406 574 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 GPR1P46091 355 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 MRPL28Q13084 256 aaKnown RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 LASP1Q14847 261 aaKnown RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 UBE3DQ7Z6J8 389 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 NR2C2APQ86WQ0 139 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 OR4Q3Q8NH05 313 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 AKAP1Q92667 903 aaKnown RBP eCLIP15.39■□□□□ 0.053e-11■■■■■ 33.9
SDC4-201ENST00000372733 AMDHD1Q96NU7 426 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 PRAP1Q96NZ9 151 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 AIF1LQ9BQI0 150 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 SPHK2Q9NRA0 654 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 SAGE1Q9NXZ1 904 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 EXTL2Q9UBQ6 330 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 SRRDQ9UH36 339 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 GPR55Q9Y2T6 319 aaPredicted RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 CPSF4LA6NMK7 179 aaKnown RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 HRO43593 1189 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 LANCL1O43813 399 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 AKAP8O43823 692 aaKnown RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 ACP5P13686 325 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 KHKP50053 298 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 EOGTQ5NDL2 527 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 ASB18Q6ZVZ8 466 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 CREB3L2Q70SY1 520 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 ZNF767PQ75MW2 155 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 KLBQ86Z14 1044 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 NRSN1Q8IZ57 195 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 NATD1Q8N6N6 113 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 DNAJC5GQ8N7S2 189 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 POGLUT1Q8NBL1 392 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 ANGPTL6Q8NI99 470 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 BBS10Q8TAM1 723 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 RAD51AP1Q96B01 352 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 NUS1Q96E22 293 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 OR52A5Q9H2C5 316 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 C11orf49Q9H6J7 331 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 SLC28A3Q9HAS3 691 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 ACSS1Q9NUB1 689 aaPredicted RBP15.39■□□□□ 0.05
SDC4-201ENST00000372733 KCNE3Q9Y6H6 103 aa15.39■□□□□ 0.05
SDC4-201ENST00000372733 ZSCAN5BA6NJL1 495 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 INHAP05111 366 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 UQCRC1P31930 480 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 NNMTP40261 264 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 NCBP2P52298 156 aaKnown RBP eCLIP15.38■□□□□ 0.05
SDC4-201ENST00000372733 ADAM15Q13444 863 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 RIN1Q13671 783 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 ZNF750Q32MQ0 723 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 MZT2AQ6P582 158 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 TMEM91Q6ZNR0 172 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 C9orf62Q8N4C0 152 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 GNPDA2Q8TDQ7 276 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 SMG7Q92540 1137 aaKnown RBP15.38■□□□□ 0.05
SDC4-201ENST00000372733 DPH7Q9BTV6 452 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 SEMA4GQ9NTN9 838 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 TAS2R7Q9NYW3 318 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 STMN3Q9NZ72 180 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 NTNG1Q9Y2I2 539 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 WNT6Q9Y6F9 365 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 A0A1B0GVC2 190 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 A6NIN4 97 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 SLC2A10O95528 541 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 KELP23276 732 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 DBPQ10586 325 aaPredicted RBP15.38■□□□□ 0.05
SDC4-201ENST00000372733 TSPAN31Q12999 210 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 GPR176Q14439 515 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 IDNKQ5T6J7 187 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 FAM205BPQ63HN1 556 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 KLHL36Q8N4N3 616 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 SUN3Q8TAQ9 357 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 OTULINQ96BN8 352 aa15.38■□□□□ 0.05
SDC4-201ENST00000372733 SECISBP2Q96T21 854 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms